Query= MSMg01no233_d02.b1 MSMg01no233_d02.b1 CHROMAT_FILE:
MSMg01no233_d02.b1 PHD_FILE: MSMg01no233_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:51 2005
(640 letters)
>mm_chr11_40302573_40303612
Length = 1040
Score = 731 bits (378), Expect = 0.0
Identities = 384/386 (99%), Gaps = 1/386 (0%)
Strand = Plus / Minus
Query: 5 gaattcatcaggaaaatcattccaattaatcaatttccatcggcagataacagatctgat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gaattcatcaggaaaatcattccaattaatcaatttccatcggcagataacagatctgat 369
Query: 65 taaatatcagctggttgtaagtgataccaagaattctaaaatttcactttgcaaatactc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 taaatatcagctggttgtaagtgataccaagaattctaaaatttcactttgcaaatactc 309
Query: 125 ttaagatgttgagaagtgatggcagtttgaatttcaaaatactggtttgtttttaatatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttaagatgttgagaagtgatggcagtttgaatttcaaaatactggtttgtttttaatatt 249
Query: 185 ttctttatgaattactgatatttgtccttttaattaaaaaaaaattattcactttacaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttctttatgaattactgatatttgtccttttaattaaaaaaaaattattcactttacaac 189
Query: 245 cccaaatcagccctctaagtatgtcctcacacaagtctttcccccattccaccttcccct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cccaaatcagccctctaagtatgtcctcacacaagtctttcccccattccaccttcccct 129
Query: 305 tctttttagagaaggggaagcccccctctgggtgttacctctttcaactaaccctgcccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tctttttagagaaggggaagcccccctctgggtgttacctctttcaactaaccctgcccc 69
Query: 365 cacctcccccgtgcccccct-ccccc 389
||||||||||| |||||||| |||||
Sbjct: 68 cacctcccccgcgcccccctgccccc 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_d02.g1 MSMg01no233_d02.g1 CHROMAT_FILE:
MSMg01no233_d02.g1 PHD_FILE: MSMg01no233_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:51 2005
(548 letters)
>mm_chr11_40248408_40249355
Length = 948
Score = 1021 bits (528), Expect = 0.0
Identities = 543/548 (99%), Gaps = 1/548 (0%)
Strand = Plus / Plus
Query: 1 attatttagtggaacttctgcattgagatggattaagaatttcttgccctgggagaaagg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 attatttagtggaacttctgcattgagatggattaagaatctcttgccctgggagaaagg 260
Query: 61 agcattagacaactaattcaatagaaaggattagtttatctcttgaaccaattagagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcattagacaactaattcaatagaaaggattagtttatctcttgaaccaattagagcca 320
Query: 121 cacactacactgtgagactggtcatttttatctgaaaggaggctggcaacctcaggaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacactacactgtgagactggtcatttttatctgaaaggaggctggcaacctcaggaaaa 380
Query: 181 tctcatcctaacatcctagcataacaatagctgggcactgtagagtcagccaagggctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcatcctaacatcctagcataacaatagctgggcactgtagagtcagccaagggctgt 440
Query: 241 agccagcatttggctattttgtgggctcttctttcctccacccttctccaccccttttcc 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccagcatttggctattttgtaggctcttctttcctccacccttctccaccccttttcc 500
Query: 301 accctttcaaccccctaacactagataggaggaaaaaaaaaggatggcaaggaaaggaag 360
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 501 accctttcaaccccctaacactagataggagggaaaaaaa-ggatggcaaggaaaggaag 559
Query: 361 ggggcaatgttgtcagttgactacatcctgctgattaggggtgtcaaattccttgggcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggggcaatgttgtcagttgactacatcctgctgattaggggtgtcaaattccttgggcaa 619
Query: 421 agtttgatcttcacattcaggagatttcatttcttcatgttattttttagttctttgcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agtttgatcttcacattcaggagatttcatttcttcatgttattttttagttctttgcac 679
Query: 481 atgaccacttaccaaaccacaaccaagagcaaccaaccaacaatctaacaacccacccca 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atgactacttaccaaaccacaaccaagagcaaccaaccaacaatctaacaacccacccca 739
Query: 541 cctttcag 548
||||||||
Sbjct: 740 cctttcag 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
