BAC Information

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BAC

Clone NameMSMg01-233F06
Chromosome11 (Build37)
Map Location 30,955,224 - 30,955,549
singlet/doubletsinglet
Overlap geneAsb3
Upstream geneSpnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Chac2
Downstream geneStc2, 2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233F06.T7 (MSMg01no233_f06.b1)MSMg01-233F06.TJ (MSMg01no233_f06.g1)
ACCAG399570AG399571
length720744
length of high quality
(start - end)
329 (47 - 375)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no233_f06.b1 PHD_FILE: MSMg01no233_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:01 2005CHROMAT_FILE: MSMg01no233_f06.g1 PHD_FILE: MSMg01no233_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATCCACTCATAGAATGGGATCCATTGACATTTGCTCCATGTTG
AAGCAACAGCTTTAATACATCTATCCGTCCACTTTCAACAGCTGCAATAC
AACAGTCAGAGAAATTACTGTCACCAAAAAGATGTTTGTAAAGCTGGACA
CTTCCATGATGTTCTCATCATTTTATATACGTTGTAATGCGCATTATTAT
AATAATGCTATGATTATTCCTAAACATTTGTCAACTATCTTAATCCAGTT
TTACTTGTATATGTGTAGGCCTCCATGTGCATGAACTTTTTTCCAAATGA
AACATGAAAAGAGAGTTTTTTGCCTCACCACCCCCGGGAGCCATCTTGGT
TCCAGGACTCTGCAGAAAGTACTCTGCACAAAAGAGAGTGTGGACTACAG
AAGCTAACAGCTTCTGGGGCAGGCAAGAGCCACAGAGCTTCTGAGGCAGC
GCCATTTTCGGGCTCCAGACATCCGGCCACCTTCCCAGCCAGAGGACAGG
TGTCCGACCGGCCTGGGAGGCCTTTGCCTCAGGATAGGCGGGAGCCATCT
GGATTCTGGGACTCCTCAGAAAGTATTCTGCACAGGTGAGAGTGTGGACT
ACTAAAACTAACAGTTTCTGTGACAGGCCAAAGCAACACAGCTTCTGGGA
AAGGTCCTGCTTTGGACCTN
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGAAGATTAATTCAGGGAGATCTCT
GAGCTCAAGGTTATCTGGGATTAAAGGTGTGGTGGCACACACCTTTCATC
TGGGCTACACCTTCTGCTGGAGACTTACATAAAGACATTGGACAAAGGAA
GACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTGTCTTTCTGTCTCTCTCTTCTTTGCCTGCTTACTGTGTGGGACTGAGC
AACTGCTAGATCCTTGGACTTCCATTCACAGCTGCTGCTGACTATTTACC
ATTGTTGGGAGTTTTATTGCACACCCCCACCAATTTTCTTTACTATATAG
AAACTACCCATAAGTTATGTGACTCTAGAGAACCCTGACTAATACACCTT
CTTAGAAGGGGGAGCAAAATACCCATGGAAGGAGTTATAGGGACAACGTT
CAGAGCATGGACTAATGGAATGACCATCTATAGACTGCCCCACCTGGGGA
TCCATCCCATAAACAACCACCAAACCCAGACATTATTGCAGATGTCAACC
AGAGTTAGCTAACAGGAGTTCTGATAAAGCTGTCTCCTGATAGGCTTCGC
CCGCGCTTGACAAATTCTAAAAGTGAATGCTCACAGCCCCTCTATTGTAT
GAAGCATAGCGCTCCCACACGAAAGAACCTTGCAAAAGTATCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_f06.b1 MSMg01no233_f06.b1 CHROMAT_FILE:
MSMg01no233_f06.b1 PHD_FILE: MSMg01no233_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:01 2005
         (329 letters)



>mm_chr11_30955021_30955749
          Length = 729

 Score =  615 bits (318), Expect = e-180
 Identities = 324/326 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatccactcatagaatgggatccattgacatttgctccatgttgaagcaacag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ggaattccatccactcatagaatgggatccattgacatttgctccatgttgaagcaacag 470

                                                                       
Query: 64  ctttaatacatctatccgtccactttcaacagctgcaatacaacagtcagagaaattact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctttaatacatctatccgtccactttcaacagctgcaatacaacagtcagagaaattact 410

                                                                       
Query: 124 gtcaccaaaaagatgtttgtaaagctggacacttccatgatgttctcatcattttatata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gtcaccaaaaagatgtttgtaaagctggacacttccatgatgttctcatcattttatata 350

                                                                       
Query: 184 cgttgtaatgcgcattattataataatgctatgattattcctaaacatttgtcaactatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cgttgtaatgcgcattattataataatgctatgattattcctaaacatttgtcaactatc 290

                                                                       
Query: 244 ttaatccagttttacttgtatatgtgtaggcctccatgtgcatgaacttttttccaaatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttaatccagttttacttgtatatgtgtaggcctccatgtgcatgaacttttttccaaatg 230

                                     
Query: 304 aaacatgaaaagagagttttttgcct 329
           ||||||||||||||||  ||||||||
Sbjct: 229 aaacatgaaaagagaggcttttgcct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)