BAC Information

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BAC

Clone NameMSMg01-234I22
Chromosome11 (Build37)
Map Location 80,761,527 - 80,761,812
singlet/doubletsinglet
Overlap geneAccn1
Upstream geneUtp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3
Downstream gene1700071K01Rik, 5530401A14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234I22.T7 (MSMg01no234_i22.b1)MSMg01-234I22.TJ (MSMg01no234_i22.g1)
ACCAG400412AG400413
length713715
length of high quality
(start - end)
231 (131 - 361)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no234_i22.b1 PHD_FILE: MSMg01no234_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:34 2005CHROMAT_FILE: MSMg01no234_i22.g1 PHD_FILE: MSMg01no234_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCTTTATTGCGGTCTGAAAATGGCTTACCCTGCCTGAGCCCTC
AAAGTCTTATGTTAATGTTTTAACGAGAATTCAAACTTAATCTGAATGTG
GTGTTATAAGCAGGGATCTTTGGGGAATGGTTAGTCTAGGTTAGGAAGGA
GCCCCCACAAACAAATTGTCCTGGTTTGCTTTTGATTGCTGTGATAAAAC
ACCATGACCAAAAGCAACTTGGAGAGGAAAGAGCTTATTATGTTTTATAG
ATTAGAGTCCATCATGGAGGGAAGTCAGGGCAAGAGCTCAAAGCGGGAAC
TGAAGCAGAGACTATGGAGAAACAGTGCTTACTGGCTTGTTATCCATGGC
TTGCTCAGCCTGCTTTCTCACACAACCCAACACCACCTGCCCAGGCAGGG
GTGGCACACCCACAGTGGCCTGGGCCTTCCCACATCAATCATTACTCAAG
AAAATGTCCTACAGATATGTCCATAGGCCAGTCCAATGGAGGCACTTCCT
CATGTGACCTTCACTATTCTTAGGTGATTCTGTGCCAAGTCATTTTAATA
ACAAACAAACAAATAAACAAACAAAAAACTAACCCACACATGAGTCCTCA
GGGTGTTACAACAAGACAACCTTGAGCTACGGAGGTAGTTCAGTGTTAGC
ACATCTGCTTAGG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCTATTAACACCACCTTGAGA
AAAACAAGCTCATATTTTATAGAAAAAAAAAGTCCAAAGCTTGGGGAGAA
TCCAGAGCTATTTCTTCTTTGGGGGATGCATGGTAATAGTGATTAAGTAG
CTAAGCTGGTAGATGCTTAATTGATTCTTATTTTCGGTCTACTTGTGGGA
AACACTGTACCCTGAGGATGCACAGGGAGTAGCCACACACCAAGCAGCCT
CTGTTTCTGGAACTTTCCCAGGGTTTCAGTGAGGTGGAACTGAATCCTGC
CATCCTTATATGTTTTTTTTTTTCCCCCCCCCCCAAGTCACTGAGGACAT
GTGTAATAAATTTTCTCTACCGCCCCGAAAAACAAGGAAGAACACCTCCG
GCTGGGCAAGCCTCCATTTCTAATGGGGACTGTGAAGCAGATACCAGGAC
TACGGGGCTGGCTGTCAGGTTGACAAATGAGCCTTCTCTTGTGAAAGGCA
CTTAGGAGGTTGAATCCAGAAGTTGGAGAAGAGCTGTCACAAGCCAGAGG
TAGGCAGTTCCCACCCAGCAGCTGGGCCTTTCTGTTTGGAAGACGAGGAG
AATGTTTCTTGTGAACCTCAAGGTGTTTCCTTCCTTATGTTGGAAACCAG
TTAAATACCAAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_i22.g1 MSMg01no234_i22.g1 CHROMAT_FILE:
MSMg01no234_i22.g1 PHD_FILE: MSMg01no234_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:34 2005
         (286 letters)



>mm_chr11_80761327_80762012
          Length = 686

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgctattaacaccaccttgagaaaaacaagctcatattttatagaaaaaaaaagtcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgctattaacaccaccttgagaaaaacaagctcatattttatagaaaaaaaaagtcca 260

                                                                       
Query: 61  aagcttggggagaatccagagctatttcttctttgggggatgcatggtaatagtgattaa 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 aagcttggggagaatccagagctatttcttctttgggggatgcaaggtaatagtgattaa 320

                                                                       
Query: 121 gtagctaagctggtagatgcttaattgattcttattttcggtctacttgtgggaaacact 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gtagctaagctggtagatgcttaattgattcttatttttggtctacttgtgggaaacact 380

                                                                       
Query: 181 gtaccctgaggatgcacagggagtagccacacaccaagcagcctctgtttctggaacttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 gtaccctgaggatgcacagggagtagccacacaccaagcagcctctgtttctagaacttt 440

                                                         
Query: 241 cccagggtttcagtgaggtggaactgaatcctgccatccttatatg 286
           ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccagggcttcagtgaggtggaactgaatcctgccatccttatatg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)