BAC Information

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BAC

Clone NameMSMg01-234J14
Chromosome11 (Build37)
Map Location 34,742,964 - 34,853,012
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnip1, Kcnmb1, Lcp2, Foxi1, Dock2, EG574403, Dock2, Ccdc99, LOC100038976
Downstream geneSlit3, LOC100039006, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532, Odz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234J14.T7 (MSMg01no234_j14.b1)MSMg01-234J14.TJ (MSMg01no234_j14.g1)
ACCAG400438AG400439
length746731
length of high quality
(start - end)
277 (45 - 321)186 (120 - 305)
definitionCHROMAT_FILE: MSMg01no234_j14.b1 PHD_FILE: MSMg01no234_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:37 2005CHROMAT_FILE: MSMg01no234_j14.g1 PHD_FILE: MSMg01no234_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,742,964 - 34,743,236)(34,852,830 - 34,853,012)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAGTGAGTAGTCTATTTTGACAGAGGCATGTGGACCATTGTCCAA
TCATTTGGAAACATAAAATCCCTGCCCTGGAAGGGTTAAACAGATTATCA
AGACTACCTACCCCTCACACACAGCTGGGGAAAATGATTGGCTAGAAGGA
ATGATACCACCAGGAACACATGCTCTCAGAGTTCTGCTTACATTACACAT
CTTATTCCTATACTCTTCAAACCTGCCATCCCTTCTGGTCATTTTTTAAC
TCAATTGCTGACCTGACTAAATTTTTTTTGTGGGTGGTGAAATGGGCTGA
GGCGNAAGGTATGCAATTACTCCTAGGCCAAGATCCCAGTTGNATTTGNT
TGNAATAATAAGTTCTTTTCTGGGAAACTTCTAGCTCAAATTCTGTGGCG
GTGGGCGATAGATGGAGCACAAGAGATGGAAATTGAAGGTGTGTAATGGG
AAATGCATTTCCAGAAAAAGCTCAAGGAATCACTTTATTCATGTTTTGGT
TTCGTCTGGATACACACGGCTAGAGCACAATTTATGGGGTGAGAGTAAAA
TCTGACATTGTTAGTTCTGAGGATGAATGTGCCCTCTTAATCCAGGACAG
TGAACTGATCATTACTTTTCATACAAAACCTATTTAGTCTGACCGAGGAA
CCTGCTGTTTCTTCCTACCCTTTGCAAAATTGCTGCTTAAATGGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGGGAAAGGAGGTAGGTATGTGTTCAAGCTCATTCATTGGTGGTA
TTTCCTGCCCTCCTGCTAAATGATTGTATGCTGCCACTCCCCTGTGGGAC
TCTTTTGTCCCTTTCTCTCTGCCTATTGTAGGATCTGCCTGTCTCCTGTC
TCATTAATGCCTCCTTTTCTGGAAGATGTGGTCTGTGTTTTTAAAGTCTA
TAATTAAGCTATGCAGTACAGAGCTGATGCATCATAGCTAATATCATAGG
GATTTGTTTTTTTTCTCCTCACTACAGCCTAANATAAAGGGTTATTGGGT
GGGTCCCCNAACAGACCCCCAGGGGGGAGANGAGGAGGGGAGANAGANNG
GANNAAAAAANGGAAAAGNNAAAGGGGNNNNGGGNNNAGANNNNNAAGAG
ANNNAGNNAGAAGNGNNNNNAAGNAGGGAAGAAGGGGAGGGAAGGGGGAA
GAAAAAGANGGGAGGAGAAAAAGAAGGGAAGGAAGAGAGAGGAGAAAAGA
AGGGAGGGAGAGAAGGAAAAGANGGAAGAGGGAGAGAAGAGGGGGAGGAG
GAGAGAGGGAAAGGAGGAGGGGGAGAAAGGGGGAGAAAGAGGAGGGAGAG
GGAAAGGGGAGGGGGGAGAGGGAAAAGAGAGGGGGGGAAGGGGGAGAAGA
GGANGGGAAGNGAAGGNGAAGGGGGAAANGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_j14.b1 MSMg01no234_j14.b1 CHROMAT_FILE:
MSMg01no234_j14.b1 PHD_FILE: MSMg01no234_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:37 2005
         (277 letters)



>mm_chr11_34742760_34743436
          Length = 677

 Score =  513 bits (265), Expect = e-150
 Identities = 271/273 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaagtgagtagtctattttgacagaggcatgtggaccattgtccaatcatttgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaagtgagtagtctattttgacagaggcatgtggaccattgtccaatcatttgg 264

                                                                       
Query: 65  aaacataaaatccctgccctggaagggttaaacagattatcaagactacctacccctcac 124
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaacataaaatccctgagctggaagggttaaacagattatcaagactacctacccctcac 324

                                                                       
Query: 125 acacagctggggaaaatgattggctagaaggaatgataccaccaggaacacatgctctca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acacagctggggaaaatgattggctagaaggaatgataccaccaggaacacatgctctca 384

                                                                       
Query: 185 gagttctgcttacattacacatcttattcctatactcttcaaacctgccatcccttctgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagttctgcttacattacacatcttattcctatactcttcaaacctgccatcccttctgg 444

                                            
Query: 245 tcattttttaactcaattgctgacctgactaaa 277
           |||||||||||||||||||||||||||||||||
Sbjct: 445 tcattttttaactcaattgctgacctgactaaa 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no234_j14.g1 MSMg01no234_j14.g1 CHROMAT_FILE:
MSMg01no234_j14.g1 PHD_FILE: MSMg01no234_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:37 2005
         (186 letters)



>mm_chr11_34852630_34853215
          Length = 586

 Score =  323 bits (167), Expect = 4e-93
 Identities = 179/183 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgattgtatgctgccactcccctgtgggactcttttgtccctttctctctgcctattgt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 383 atgattgtatgctgccactcccctgtgggactcctttgtccctttctctctgcctattgt 324

                                                                       
Query: 61  aggatctgcctgtctcctgtctcattaatgcctccttttctggaagatgtggtctgtgtt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 323 aggatctgcctgtctcctgtctcattaatgcctccttttctggaagatgtggtctgtgat 264

                                                                       
Query: 121 tttaaagtctataattaagctatgcagtacagagctgatgcatcatagctaatatcatag 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aataaagtctataattaagctatgcagtacagagctgatgcatcatagctaatatcatag 204

              
Query: 181 gga 183
           |||
Sbjct: 203 gga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)