BAC Information

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BAC

Clone NameMSMg01-234N05
Chromosome11 (Build37)
Map Location 50,449,680 - 50,449,969
singlet/doubletsinglet
Overlap geneAdamts2
Upstream geneFlt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1
Downstream geneZfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234N05.T7 (MSMg01no234_n05.b1)MSMg01-234N05.TJ (MSMg01no234_n05.g1)
ACCAG400593AG400594
length750750
length of high quality
(start - end)
244 (127 - 370)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no234_n05.b1 PHD_FILE: MSMg01no234_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:56 2005CHROMAT_FILE: MSMg01no234_n05.g1 PHD_FILE: MSMg01no234_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCCCTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTC
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCTGTGTCTCTGCCCCCATGTGAAGTTCTTTGAT
CCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTAATCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAATTGCT
CTGTAGTAAAGCTTTAGGTCCGGCATGGTGATTCCACCAGAGGTTCTTTT
ATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGA

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGAGTGGATCCATAGGGTGCTGGCT
GCCAGGGACCCTCTCCTCCTGCACACCCCTCACCTCACTTCCTGCCTCCC
CAGGGGCTCTGGTGCCTTTACCCACACCAGACCTTGGAGGCAACGTTTCT
GCTCTTTCATTCAGATGCCCACTAATCTTTCTATGGGTGTAGACACAGGC
CAGGCTCCTGACCCCGAGGGTGATGTAAAGAGGACTAGAGAGGAGCAAGT
TTCTGTCCTTAGCTCTCAGAGCTTTCTGTCCCCCTCCTAGAGTACTCTGA
TCTGGCTGTGGACATTAATTCTGCGCGCCCCCCTGTCTGCAGGAATGTGT
GAGAGATAAGACAAAGCCAGCAGGGAAGTATCAAGACTATTCATTCAACA
TTCTCCTACCTAACACCAATTAAGAGTCAATATGAATGTAGGGTTATAGA
GAGAGAGCCCAGGTGAGCCATGCAGAGAGACAGTGCAGTCCCATGGTCCA
CAGTCTCCAGTAGTCAAAGATCCAGGGCCACAGGTCTGTAGACAGGGCTA
GAGAAAGGCTGTATATTTAAGTCCCATGTCATAAGATGTCCCCCAAAGCA
ATCCAGAGTCAGATATCTGCAGACAGCACTTATTCCACTGGTATCATAGA
CTTGGCCTGACCTTTACCCTGAAGAACTAACAGAAGGAGCCCAAGTTGCN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_n05.g1 MSMg01no234_n05.g1 CHROMAT_FILE:
MSMg01no234_n05.g1 PHD_FILE: MSMg01no234_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:56 2005
         (290 letters)



>mm_chr11_50449480_50450169
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagtggatccatagggtgctggctgccagggaccctctcctcctgcacacccctcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 490 ttgagtggatccatagggtgctggctgccagggaccctctcctcctgcagacccctcacc 431

                                                                       
Query: 61  tcacttcctgcctccccaggggctctggtgcctttacccacaccagaccttggaggcaac 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tcactttctgcctccccaggggctctggtgcctttacccacaccagaccttggaggcaac 371

                                                                       
Query: 121 gtttctgctctttcattcagatgcccactaatctttctatgggtgtagacacaggccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gtttctgctctttcattcagatgcccactaatctttctatgggtgtagacacaggccagg 311

                                                                       
Query: 181 ctcctgaccccgagggtgatgtaaagaggactagagaggagcaagtttctgtccttagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctcctgaccccgagggtgatgtaaagaggactagagaggagcaagtttctgtccttagct 251

                                                             
Query: 241 ctcagagctttctgtccccctcctagagtactctgatctggctgtggaca 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctcagagctttctgtccccctcctagagtactctgatctggctgtggaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)