BAC Information

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BAC

Clone NameMSMg01-235K21
Chromosome11 (Build37)
Map Location 48,660,423 - 48,660,707
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7
Downstream geneIrgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235K21.T7 (MSMg01no235_k21.b1)MSMg01-235K21.TJ (MSMg01no235_k21.g1)
ACCAG401180AG401181
length728738
length of high quality
(start - end)
317 (46 - 362)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no235_k21.b1 PHD_FILE: MSMg01no235_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:04 2005CHROMAT_FILE: MSMg01no235_k21.g1 PHD_FILE: MSMg01no235_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGCTCTGAGCCCCATCTTTTAAGGGGGTTATTTGATTT
TCTGGAGTCCACCCTCTTGAGTCCCTTATATATATTGGATATTAGTCCCC
TATCTGATTTAAGATAGGTAAAGATCCCTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCAT
GAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TATTCAGGAATTTTTTCCCTGTGCCCATATCCTCGAGACTTTTCCCCACT
TTCTCCTCTATTTTTTTCAGCGCCCCCCCCCCCTATGTGAAGTTCCTTGA
TCCACTTAGATTTGACCTCACCACAAAGAGATAAGTATGGATCGATTCGC
ATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGT
GACCATAGGTGTGTGGGTTCATTTCTGGGTCTTTATTTCTATTCCATTGG
TCTACTTGTCTGTCACTATATCAGTACCATGCCTTTTTTATTACAATTGC
TCTGTTATATAGCTTTATGTTTGTGTTGCTGATTCCTCCATAGGTACTTT
TATCCTTTATAATCACTTTTGCTTTCTT
GCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGAGCTACATACATA
GCGAGACCCTGTCTCAAGAAAAACCAACAAAATCCAGAACAAACAACAAC
AAAAGACCACCAGCATATTCAGATAGATTTCACAAGCCACAAAAGAGTCA
AGCATGAAAGACAGAACGACAGAAAAGACACCGAGGCGCTGCCCAGTGTG
GTGGCATTCACTTTGGGATCCCAGCACTGGGAAGTGGGAGTAGAAGTATC
AGGAGTTCAAGACCACCCTCTGTTCCAAATGAAATTTTGAGAACAGCCTG
AGCCTGTGAGTCTGTTTCTTACCCCNAACANACCACCAAGACGTTGTAGC
TTGTGTGGGCTGATAACCACGCTAACAGAAAACACTGGGTCTTGTTAGAA
GGCTCAGGGAGGATTTTACAGTAAAGGCTTTGCATATCTGAGAGGGAGGG
AGCGTTGAAGGTATCATCACTGTGATAACATCCAGTAGCCAGCCACAGCT
GGAAGCCACTGTCACCTGTGTTTAGTGGGGCATGGCTTATTTTCTGTGTG
TCATGCTTTCTCCAAGGCAATAGAGGTTATATGATGCTGACTTGATTTTC
TTCCATGTTTTCTTCCAGGAGTTCAAAAGCACACTGAGCAAGTGAGTGAA
CTTCACGCTTCCTAGGGTCTTTCCACTCCACGTTGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_k21.g1 MSMg01no235_k21.g1 CHROMAT_FILE:
MSMg01no235_k21.g1 PHD_FILE: MSMg01no235_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:04 2005
         (285 letters)



>mm_chr11_48660223_48660907
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagagctacatacatagcgagaccctgtctcaagaaaaaccaacaaaatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 caggacagccagagctacatacatagcgagaccctgtctcaagaaaaacaaacaaaatcc 260

                                                                       
Query: 61  agaacaaacaacaacaaaagaccaccagcatattcagatagatttcacaagccacaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaacaaacaacaacaaaagaccaccagcatattcagatagatttcacaagccacaaaag 320

                                                                       
Query: 121 agtcaagcatgaaagacagaacgacagaaaagacaccgaggcgctgcccagtgtggtggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcaagcatgaaagacagaacgacagaaaagacaccgaggcgctgcccagtgtggtggc 380

                                                                       
Query: 181 attcactttgggatcccagcactgggaagtgggagtagaagtatcaggagttcaagacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcactttgggatcccagcactgggaagtgggagtagaagtatcaggagttcaagacca 440

                                                        
Query: 241 ccctctgttccaaatgaaattttgagaacagcctgagcctgtgag 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctctgttccaaatgaaattttgagaacagcctgagcctgtgag 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)