Query= MSMg01no235_o14.b1 MSMg01no235_o14.b1 CHROMAT_FILE:
MSMg01no235_o14.b1 PHD_FILE: MSMg01no235_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:20 2005
(310 letters)
>mm_chr11_115688927_115689636
Length = 710
Score = 582 bits (301), Expect = e-171
Identities = 304/305 (99%)
Strand = Plus / Plus
Query: 5 gaattcttgagctaggagaggctcctttgggcgtggggacagggaagccaagaggtacct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgagctaggagaggctcctttgggcgtggggacagggaagccaagaggtacct 264
Query: 65 gactctaccctttaggaattcatcaagagactagagccctctcttgagggacttggcttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gactctaccctttaggaattcatcaagagactagagccctctcttgagggacttggcttg 324
Query: 125 gtatgctcagggtaaatagtattaatatttaataatattatcctgggatcttgtcaagga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtatgctcagggtaaatagtattaatatttaataatattatcctgggatcttgtcaagga 384
Query: 185 gttgagtatcccgaagccacagtctgtgacagggcctgcaaagttacctcagaggatgct 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttgagtatcccgaagccatagtctgtgacagggcctgcaaagttacctcagaggatgct 444
Query: 245 gtatatgacatctgagtggcctttgcctgtgtcttgagagcagaataggaccatgtagat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtatatgacatctgagtggcctttgcctgtgtcttgagagcagaataggaccatgtagat 504
Query: 305 tccac 309
|||||
Sbjct: 505 tccac 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_o14.g1 MSMg01no235_o14.g1 CHROMAT_FILE:
MSMg01no235_o14.g1 PHD_FILE: MSMg01no235_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:20 2005
(242 letters)
>mm_chr11_115847487_115848128
Length = 642
Score = 437 bits (226), Expect = e-127
Identities = 238/242 (98%), Gaps = 2/242 (0%)
Strand = Plus / Minus
Query: 1 aaatcctgcagacagcagtggcacagctggaacccagacctcagggtccagttacctgct 60
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 334 aaatcctgcagacaccagtggcacagctggaacccagacctcagggtcctgttacctgct 275
Query: 61 cactaactgtccctcttcaatgttcatatgtctcaagtcgtgacagacttgctcagggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cactaactgtccctcttcaatgttcatatgtctcaagtcgtgacagacttgctcagggtc 215
Query: 121 tagggtgattctgcttgtctttgttttttttgtttgtttgtttgtttgtttgtttgtttg 180
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 214 tagggtgattctgcttgtctttgtttttttt-ttt-tttgtttgtttgtttgtttgtttg 157
Query: 181 tttttgtgacagggtttctctgtatagccctggctgtcctggaactcactctgtagatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 tttttgtgacagggtttctctgtatagccctggctgtcctggaactcactctgtagatca 97
Query: 241 ag 242
||
Sbjct: 96 ag 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
