Query= MSMg01no236_j06.b1 MSMg01no236_j06.b1 CHROMAT_FILE:
MSMg01no236_j06.b1 PHD_FILE: MSMg01no236_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:10 2005
(674 letters)
>mm_chr11_51240868_51241941
Length = 1074
Score = 1226 bits (634), Expect = 0.0
Identities = 658/666 (98%)
Strand = Plus / Plus
Query: 9 tccaagcccttggaatggtgtcaccacatctatggtgtgtcttcctgcttcatttgaacc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tccaagcccttggaatggtgtcaccacatctatggtgtgtcttcctgcttcatttgaacc 268
Query: 69 tctctggaaacacccttaaagacacactcggaggtgtgtctcccaggtgattccacacca 128
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 269 tctctggaaacacccttaaagacacactcagaggtgtgtctcccaggtgattccacacca 328
Query: 129 gttgagatgtccatgaagctgatctgttgtgtatatggcccatgctaatccctggggagg 188
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 329 gttgagatgtccatgaagctgatctgtcgtgtatatggcccatgctaatccctggggagg 388
Query: 189 cctctgctaacaattttaacctcatcttttcttattgttgacttggaagggttctttgta 248
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 389 cctctgctaacaattttaacctcctcttttcttattgttgacttggaagtgttctttgta 448
Query: 249 tatttgaagcagcagttcttcatcgggtgtacttgccacaggtattgtctcctagtttgt 308
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 449 tatttgaagcggcagttcttcatcgggtgtatttgccacaggtattgtctcctagtttgt 508
Query: 309 gactaactcacaaatctggttctaagaagctgattccgatcagagccagtaggaaaggaa 368
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aactaactcacaaatctggttctaagaagctgattccgatcagagccagtaggaaaggaa 568
Query: 369 gtggaggtcacatactgcaggagtagtagtaagctttgtcacctcaaaggggtgggtctt 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gtggaggtcacatactgcaggagtagtagtaagctttgtcacctcaaaggggtgggtctt 628
Query: 429 agaaaggatagggagtatacaccctgagcctattagcacatagatgggttcctacagaag 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agaaaggatagggagtatacaccctgagcctattagcacatagatgggttcctacagaag 688
Query: 489 ctgtgcatgagaacatagtgacccggagggtcatgatgggttcgccattgataaagagga 548
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ctgtgcatgaaaacatagtgacccggagggtcatgatgggttcgccattgataaagagga 748
Query: 549 tatgatgatgaaggagtcacttggagaactgtcagtcagagtcaatacaagaagcacaag 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tatgatgatgaaggagtcacttggagaactgtcagtcagagtcaatacaagaagcacaag 808
Query: 609 acacaaaaaggcaggtacccatctggaactccatggctcctttttttcaatggtggaata 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 acacaaaaaggcaggtacccatctggaactccatggctcctttttttcaatggtggaata 868
Query: 669 gtcatg 674
||||||
Sbjct: 869 gtcatg 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_j06.g1 MSMg01no236_j06.g1 CHROMAT_FILE:
MSMg01no236_j06.g1 PHD_FILE: MSMg01no236_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:10 2005
(152 letters)
>mm_chr11_51257450_51258005
Length = 556
Score = 279 bits (144), Expect = 7e-80
Identities = 152/156 (97%), Gaps = 4/156 (2%)
Strand = Plus / Minus
Query: 1 aggaggaagtaacacacagcctttgatctcaccaagctttaaaaagcccaataggaaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aggaggaagtaacacacagcctttgatctcaccaagctttaaaaagcccaataggaaagg 297
Query: 61 cagacagctgactgaccaattctaacagtgagtgataggagttgtaagaactcagatgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cagacagctgactgaccaattctaacagtgagtgataggagttgtaagaactcagatgtg 237
Query: 121 actggcgggggg-tggg---ggtgggaaagggtggg 152
|||||||||||| |||| ||||||||||||||||
Sbjct: 236 actggcgggggggtgggtggggtgggaaagggtggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 556
Length adjustment: 8
Effective length of query: 144
Effective length of database: 548
Effective search space: 78912
Effective search space used: 78912
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
