BAC Information

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BAC

Clone NameMSMg01-236P08
Chromosome11 (Build37)
Map Location 97,060,131 - 97,060,376
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1
Downstream geneNpepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236P08.T7 (MSMg01no236_p08.b1)MSMg01-236P08.TJ (MSMg01no236_p08.g1)
ACCAG402059AG402060
length787791
length of high quality
(start - end)
247 (125 - 371)242 (129 - 370)
definitionCHROMAT_FILE: MSMg01no236_p08.b1 PHD_FILE: MSMg01no236_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:39 2005CHROMAT_FILE: MSMg01no236_p08.g1 PHD_FILE: MSMg01no236_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTTTCCCTATTCTTTTTCCCCCTCCTTATCTTCCTACACCTATAACC
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGACATTTCCGAGATACATAGTGAGACCATGTCTCAAACAAA
CCAAAGATAATAACAATAAAATATAACTCTTTAGGGGCTGGAGAGATGGC
TCTGTGGGTAAGAGCACCCACTGCTCTTCCAAAGGTCCTGAGTTCAAATC
CCAGCAACCACATGGTGGCTCACAACCACCTGTAATGAGATCTGACTCCT
TCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATA
AGCCTTTAAATAAATAAATAAATAATTAAATAAATAAATAAATAAATAAA
TAAACAAACACATCTTTATTAAAAAATCTGGCCCTGGCAAGATGGCTCAG
CGGATAAGAGCACTAATTGCTCTTCTGAAAGTACTGAGTTCAAATCCCAG
CAACCACATCATGGTTCACACCATCTGTAATAGGATCTGACACCCTCTAA
AGACAGCTAAAGTGAGCGGAGTTTTATTCCCAGCAATCATGTGAGGGCTC
ACAGCCATCTACAGCGTACTCATATATATTTAACAAATAAATAAATCTTT
TAAAAAAACAATTTGCCTCCTCTAGTAATATATATCTTCCAGACGGCAAC
GCCTGTTTTCTGTACCTCACGGTCTCCCTAATGTCCGACCGCAATGTCAA
TGATTGACATGAAGTATGACCTTGATATAGAAATTAT
CCCCCTTTTTTCCTTTTCTCCTNCTTATCTTACTTCATTTCTTTNNNCTC
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGAACTGGAGTTTTGCCTGC
TTGGAAGCCGCAGTTGGGTGCTAGCACGCAAACCCTTCCTGTTTGGAAAA
TCTTTCAGGTCTTGATTTAACATCACATCCTCAAAATGGCTTTTCCTGAG
CATTCAGAATCCCCAGTGATGCTCTCAATTGTATGGCATCCAGTGCTTCC
CATTCCAAATGGTTAGTGGCGGGGACCAGCAGCAGAACTATTACCTAGCA
AAGCCCTATCCCTGCAGGAGAATATTTTTCTCTTGCTGCCCTTTGTCCAT
GCTAACTCCTCAGTTTCTTTTTTTCACCCACCCCACCTCTGCCATGTCTG
CCATTCTTCTTTAGTGAGTGAAACCTCAGAAGAAACACTGTCTGTTGTCT
ATACCCCAGGGCTAGGAACTAAGACATCCCAGGCTGGGATTTGAACACCA
CAGTCCACTTGGGACAGGGGTTTTTCTGACTATATTCCATTGACCATGAC
ATTTAAAAGCCTTTTAAATTTATGCATGTGTGGACCACATGTGCATTCCA
TTGAGTGCATGTCTGTGTGAGTATGCACATCTGAGTATTTATGTGTGCTG
AATGCTTGTAGGTACTCTCATAGGCCAGGTATGGACATTGGGTCTCCAGG
AAAAACAGTTGCTGATAGTTTATTTCTTATGGCTGCCTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_p08.g1 MSMg01no236_p08.g1 CHROMAT_FILE:
MSMg01no236_p08.g1 PHD_FILE: MSMg01no236_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:39 2005
         (242 letters)



>mm_chr11_97059935_97060576
          Length = 642

 Score =  418 bits (216), Expect = e-121
 Identities = 237/246 (96%), Gaps = 4/246 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgaactggagttttgcctgcttggaagccgcagttgggtgctagcacgcaaacccttc 60
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 197 cctgaactggagttttgcctgcttggaagccgcagttgggtgctaggaagcaaacccttc 256

                                                                       
Query: 61  ct----gtttggaaaatctttcaggtcttgatttaacatcacatcctcaaaatggctttt 116
           ||    |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 257 cttcctgtttggaaaatctttcaggtcttgatttaacatcacatcctcaaaatgactttt 316

                                                                       
Query: 117 cctgagcattcagaatccccagtgatgctctcaattgtatggcatccagtgcttcccatt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cctgagcattcagaatccccagtgatgctctcaattgtatggcatccagtgcttcccatt 376

                                                                       
Query: 177 ccaaatggttagtggcggggaccagcagcagaactattacctagcaaagccctatccctg 236
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 377 ccaaatggttagtggcggggaccagcggcagaactattacctagcaaagccctaaccctg 436

                 
Query: 237 caggag 242
           ||||||
Sbjct: 437 caggag 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)