Query= MSMg01no237_b11.b1 MSMg01no237_b11.b1 CHROMAT_FILE:
MSMg01no237_b11.b1 PHD_FILE: MSMg01no237_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:49 2005
(498 letters)
>mm_chr11_36968025_36968918
Length = 894
Score = 909 bits (470), Expect = 0.0
Identities = 490/498 (98%), Gaps = 4/498 (0%)
Strand = Plus / Minus
Query: 1 caaagttcttgggcttgaaaaaagctgggttccaaaagggatataggatttcgttgctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 694 caaagttcttgggcttgaaaaaagctgggttccaaaagggatataggattttgttgctat 635
Query: 61 ttttcttgttgttttggtttggtttggttttctcctcatgtcttccttgactttatctag 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ttttc---ttgttttggtttggtttggttttctcctcatgtcttccttgactttatctag 578
Query: 121 ttgtatactaattattgatatattttaactaaacatagaggccacaattattcttactgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttgtatactaattattgatatattttaactaaacatagaggccacaattattcttactgt 518
Query: 181 gcttaccatgtaagagacaatgtcaaggtacattttgtgccccaaactcaaattcaaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gcttaccatgtaagagacaatgtcaaggtacattttgtgccccaaactcaaattcaaaag 458
Query: 241 cagattgtgttgtgaaagtacctttcctttagagatatattaatttccgctctgtctggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cagattgtgttgtgaaagtacctttcctttagagatatattaatttccgctctgtctggg 398
Query: 301 ctagtctccactctgacaatgaatcagttctaataacagtcatagagctatgcgcatcaa 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 397 ctagtctccactctgacaatgaatcagttctaataacagtcatagagttatgcgcatcaa 338
Query: 361 aacatatttaatagcttatgtgttcatacactgaaagctttgcatacttagaattttaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aacatatttaatagcttatgtgttcatacactgaaagctttgcatacttagaattttaga 278
Query: 421 atagaattcaactttttttttccctattaaatgccagcagggtgagttgcattaatgacc 480
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 277 ttagaattcaactttttttt-ccctattaaatgccagccgggtgagttgcattaatgacc 219
Query: 481 atggttatgtttgaatgt 498
||||||||||||||||||
Sbjct: 218 atggttatgtttgaatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 894
Length adjustment: 10
Effective length of query: 488
Effective length of database: 884
Effective search space: 431392
Effective search space used: 431392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_b11.g1 MSMg01no237_b11.g1 CHROMAT_FILE:
MSMg01no237_b11.g1 PHD_FILE: MSMg01no237_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:49 2005
(474 letters)
>mm_chr11_36851212_36852087
Length = 876
Score = 874 bits (452), Expect = 0.0
Identities = 470/476 (98%), Gaps = 2/476 (0%)
Strand = Plus / Plus
Query: 1 atttagcagagaatatttaaaggtaaaatctaaaaggcgaatgctgaaccggaccttgaa 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 atttagcagagaatatttaaaggtaaaatctaaaaggcgaatgctgaattggaccttgaa 260
Query: 61 gagtcaatattaggaatttcctaatt-aaaaaaaaataagaagttacataaaacacttcg 119
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 261 gagtcaatattaggaatttcctaatttaaaaaaaaataagaagttacataaaacacttag 320
Query: 120 aaactatattagaatattttccaaaggtacgttctaataaggataatgcatcgatcctgc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaactatattagaatattttccaaaggtacgttctaataaggataatgcatcgatcctgc 380
Query: 180 tttggtacactgtaggggaaatggcagaaaaatagaagttccaaattaaaatgcatcacg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttggtacactgtaggggaaatggcagaaaaatagaagttccaaattaaaatgcatcacg 440
Query: 240 gatagaagtgtgatttaggacataacacaagtccaccaggagcacaggaaatatcttctc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatagaagtgtgatttaggacataacacaagtccaccaggagcacaggaaatatcttctc 500
Query: 300 acattcaatcgaggcaagggaatgtgccattgccttggtttaggaagagtttcatatcta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acattcaatcgaggcaagggaatgtgccattgccttggtttaggaagagtttcatatcta 560
Query: 360 gtccatcagggttaaaaaaaaa-tccataagttacagagcttctctctgaaattatttgt 418
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 561 gtccatcagggttaaaaaaaaaatccgtaagttacagagcttctctctgaaattatttgt 620
Query: 419 taaatttaaattagaaaatctccccaatttggccatctgagtatgagctgaatgaa 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaatttaaattagaaaatctccccaatttggccatctgagtatgagctgaatgaa 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 876
Length adjustment: 10
Effective length of query: 464
Effective length of database: 866
Effective search space: 401824
Effective search space used: 401824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
