BAC Information

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BAC

Clone NameMSMg01-237F10
Chromosome11 (Build37)
Map Location 37,378,880 - 37,553,614
singlet/doubletdoublet
Overlap geneLOC100039148
Upstream geneOdz2
Downstream geneLOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237F10.T7 (MSMg01no237_f10.b1)MSMg01-237F10.TJ (MSMg01no237_f10.g1)
ACCAG402313AG402314
length831688
length of high quality
(start - end)
286 (129 - 414)320 (4 - 323)
definitionCHROMAT_FILE: MSMg01no237_f10.b1 PHD_FILE: MSMg01no237_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:09 2005CHROMAT_FILE: MSMg01no237_f10.g1 PHD_FILE: MSMg01no237_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,378,880 - 37,379,161)(37,553,303 - 37,553,614)
sequence
TCCCTTTCTCTTTTTTTTCNNNCAACCGGCCGCTTCNATTATTTNNNCTT
TCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTTTTATTATCAATTTATT
TCTTCTGGTTTGTTTTCCCTTCTTCTCCTTTTTTTTCTTTTCTCTTCTAT
TATTTTCCATTTTTAGATAGGGTCTTGCTTTGTAGCCCAGGCTGTTCTTA
CACTTATCGTCTGTCTGTCCCAGACTCCAGAGCACAGGTTCTCCTATACT
TAACTCCAGTTACTCCTCTCTTCCTCTTCCTCCTCTTTGAATGAACAATC
AATTACAGCTCTGATAATTTATTAGGTAAACTAATCAGTTGACCACATAC
AAGATCAATCTTCTTTTTAATTCCTCCCCCCAATTGCTTATTTGCTCTCG
AAAGAAAGAAAGAAAGAACGAAAGAAAGAAAGAAAGAAAGATTGAATGAA
AGAAGGGAGGGAGGGAGGTAGGTAGGCAGGTACTCTCTTTTTTTTTAAAT
CTATCTTTATTTAATATTCTCTTTTATCTTTAAAAATCTTCCATTTTATT
TTTATTTTTCTTCAATCACTTATAATTCACTTTTATTTCTTACCTCAATT
TTTTTTTTTTTTATTATTTTTTTTTTCCACTCTATTATTTCCCTCCCTCT
TTTTATTATATGATCTTTATTTTTTATTCTTTTTCCTTATACCACCCTTT
ATTTAAACTTATATATCTTATTTTTCCTACATTCACATTTTTTTAATATA
ATATATCTATTACCTCACCCTGCTTATCTTN
GAGGATCCGCGGAATTCTAGATTATGACACCCTTGAAAGCTTAATTTCAT
GGCCATTCCCAATTCCATGGCTCTTTCCAACATCCCCCATGTATCCATAA
ACATATTAGAATTGGAGTGTTTGTTATTCTTCACTGATGCTTCCCCCAGA
GACTCAGTAACTTCCCACACATGTTGTAAGTAGGTCAGTGAGTTTATACT
TATATTATTCTTTAAATTTCAAAATAGAATTATTTTTGTTACTTTAGGGT
GAAAAATAAGAAAAAAATTTAAAAGGATGTATCAAAACACTCTTGCTATG
ATAAAAGCATAAAGGTGTATAATTACTTATAGACACCACCCCCTACTTGG
AGACTACTGAAGGCAAAAAACTCAATGGGATAGACTAGCTCCTCCTGAGT
CTCCCAGGTGGGTTGGTTATCATGACATATACTAAGCACGTGTCTGCTGT
TGCTTCATGCTTCTGTCTGAAATGGGCAGATGGTGAGTTAAGGCTGAGGC
TCTTTCAACTCTTGCCAGCATAAAGTCAGAGAAAACGATAACCCTTTCAT
TAGTAAAGGGTTGAGACTTCTCAATCAGGACAAATAGGCAAAACTCACAA
AGCTTACTAACTACTGAAATGTCATAAGATTCCGTGATCTCAAATTTTGC
CTACTTACAATTCCTTTTCAGAGCCAGCAACTTATACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_f10.b1 MSMg01no237_f10.b1 CHROMAT_FILE:
MSMg01no237_f10.b1 PHD_FILE: MSMg01no237_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:09 2005
         (286 letters)



>mm_chr11_37378680_37379365
          Length = 686

 Score =  514 bits (266), Expect = e-150
 Identities = 278/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatttttattatcaatttatttcttctggtttgttttcccttcttctccttttttttct 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ccatttttattatcaatttatttcttctggtttgttttcccttcttttccttttttttct 260

                                                                       
Query: 61  tttctcttctattattttccatttttagatagggtcttgctttgtagcccaggctgttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctcttctattattttccatttttagatagggtcttgctttgtagcccaggctgttct 320

                                                                       
Query: 121 tacacttatcgtctgtctgtcccagactccagagcacaggttctcctatacttaactcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacacttatcgtctgtctgtcccagactccagagcacaggttctcctatacttaactcca 380

                                                                       
Query: 181 gttactcctctcttcctcttcctcctctttgaatgaacaatcaattacagctctgataat 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 gttactcctctcttcctcttcctcctctttgaatgaacagtcaattacagctctgataat 440

                                                     
Query: 241 ttattaggtaaactaatcagttgaccacatacaagatcaatc 282
           |||  |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaaaggtaaactaatcagttgaccacatacaagatcaatc 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no237_f10.g1 MSMg01no237_f10.g1 CHROMAT_FILE:
MSMg01no237_f10.g1 PHD_FILE: MSMg01no237_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:09 2005
         (320 letters)



>mm_chr11_37553095_37553814
          Length = 720

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattctagattatgacacccttgaaagcttaatttcatggccattcccaattccatggc 68
           ||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 520 gaattctagattaagagacccttgaaagcttaatttcatggccattcccaatcccatggc 461

                                                                       
Query: 69  tctttccaacatcccccatgtatccataaacatattagaattggagtgtttgttattctt 128
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tctttccaacatcatccatgtatccataaacatattagaattggagtgtttgttattctt 401

                                                                       
Query: 129 cactgatgcttcccccagagactcagtaacttcccacacatgttgtaagtaggtcagtga 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cactgatgcttcccccagagactcagtaacttcccacacatgttgtaagtaggtcagtga 341

                                                                       
Query: 189 gtttatacttatattattctttaaatttcaaaatagaattatttttgttactttagggtg 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gtttatacttatattattctttaaatttcaaaatagaattatttttgttactttagggtg 281

                                                                       
Query: 249 aaaaataagaaaaaaatttaaaaggatgtatcaaaacactcttgctatgataaaagcata 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aaaaataagaaaaaaatttaaaaggatgtatcaaaacactcttgctatgataaaagcata 221

                       
Query: 309 aaggtgtataat 320
           ||||||||||||
Sbjct: 220 aaggtgtataat 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)