Query= MSMg01no237_h07.b1 MSMg01no237_h07.b1 CHROMAT_FILE:
MSMg01no237_h07.b1 PHD_FILE: MSMg01no237_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:17 2005
(509 letters)
>mm_chr11_36729368_36730277
Length = 910
Score = 857 bits (443), Expect = 0.0
Identities = 491/507 (96%), Gaps = 3/507 (0%)
Strand = Plus / Plus
Query: 1 ccttagatgagtggggccttacaggtcaatttcaggtaatacactctcttgccctattgt 60
|||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 201 ccttagatgaatggggccttacaggccaatttcaggtaatacactctcttgttgtattgt 260
Query: 61 tttttattctacccagagaagttttgagtgttcacctccttttacacacatattagttac 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 tttttattctacccagagaagttttgagtgttcacctccttttacgcacatattagttac 320
Query: 121 attagagta-ttttccta-ttaatgaaagaaatatcttactgagcaccaactatactcca 178
||||||||| |||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attagagtattttttctactt-atgaaagaaatatcttactgagcaccaactatactcca 379
Query: 179 gaaaacaaacatggttattccagaagctgtagctcaatgggtctaaacatataggatggg 238
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaaaacaaacacggttattccagaagctgtagctcaatgggtctaaacatataggatggg 439
Query: 239 acttacattgtgcttttcatcaaagtaaaaaaagggggacaagtagttggtagaaattat 298
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 440 acttacattgtgcttttcatcatagtaaaaaaagggggacaagtagttggtagaaattat 499
Query: 299 ttcctatggaccattagattagttttgctaaactaagttcttagcttccagcctggattg 358
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 500 ttcctatggaccattagattagttttgctaaactaagttcttagcttctagtctggattg 559
Query: 359 ccatgcatgttcaatacctattagctattattagagtctggcatatgccagaggaatggt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccatgcatgttcaatacctattagctattattagagtctggcatatgccagaggaatggt 619
Query: 419 ttaataaatattttgagaatgaatactcagactgattacatattgtgtttaacaggatag 478
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 620 ttaataaatgttttgagaatgaatactcagactgattacatattgtgtttaacaagatag 679
Query: 479 tggccttgcttatacccaaatgcttat 505
|||||||||||||||||||||||||||
Sbjct: 680 tggccttgcttatacccaaatgcttat 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 910
Length adjustment: 10
Effective length of query: 499
Effective length of database: 900
Effective search space: 449100
Effective search space used: 449100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_h07.g1 MSMg01no237_h07.g1 CHROMAT_FILE:
MSMg01no237_h07.g1 PHD_FILE: MSMg01no237_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:17 2005
(479 letters)
>mm_chr11_36850727_36851605
Length = 879
Score = 903 bits (467), Expect = 0.0
Identities = 476/479 (99%)
Strand = Plus / Minus
Query: 1 acctgctccaggttctagagtacaagaatcacaggcatgctcactaggcatgagctaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 acctgctccaggttctagagtacaagaatcacaggcatgctcactaggcatgagctaaag 620
Query: 61 cattaaggttgtattccaactctggaagaacactgaccaaatatacctccaccccacaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cattaaggttgtattccaactctggaagaacactgaccaaatatacctccaccccacaat 560
Query: 121 tgcttcttctgctgagctcctcgttggcctccttctccctctttcccaccaactcaaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgcttcttctgctgagctcctcgttggcctccttctccctctttcccaccaactcaaaca 500
Query: 181 tggaggagcagcattaattttactccttgggataagttataattaaggacactgtatgcc 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 499 tggaggagcagcattaattttactccttgggataggttataattaaggacactgtatgcc 440
Query: 241 catcctcacttaacctcaatgcacacacagaattacaactactgggtcaaatcagattcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 catcctcacttaacctcaatgcacacacagaattacaactactgggtcaaatcagattcg 380
Query: 301 gcaaagagtctgttcaaatgtatattgaatgtcatccaactttacattggttctgatttt 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gcaaagagtctgttcaaatgtgtattgaatgtcatccaactttacattggttctgatttt 320
Query: 361 taaccactatttgaaatacagtttttcgggagccattttcccttcatttcctggtacaca 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 taactactatttgaaatacagtttttcgggagccattttcccttcatttcctggtacaca 260
Query: 421 atatctgttagtaaaacaaatatttatatgagagctactgtcctaataacttattgttt 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atatctgttagtaaaacaaatatttatatgagagctactgtcctaataacttattgttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
