Query= MSMg01no237_j12.b1 MSMg01no237_j12.b1 CHROMAT_FILE:
MSMg01no237_j12.b1 PHD_FILE: MSMg01no237_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:27 2005
(284 letters)
>mm_chr11_37430930_37431613
Length = 684
Score = 518 bits (268), Expect = e-151
Identities = 280/284 (98%)
Strand = Plus / Plus
Query: 1 attttgatgtatgtatgcctcattgaaatattgtgtagtttgggaaccaaacttaaacat 60
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 atttcgatgtatgtatgcctcattgaaatattgtgtagtttgggaataaaacttaaacat 260
Query: 61 aataatattcacaaattgtatttataaaacatatatgcattatttaacttcttgttaggg 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 aataatattcacaaattgtatttatgaaacatatatgcattatttaacttcttgttaggg 320
Query: 121 ttcatctaacaattgaagtaattgaacagaaatgagatgtattaaatttatacatgtact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatctaacaattgaagtaattgaacagaaatgagatgtattaaatttatacatgtact 380
Query: 181 ttgaaagtctgattttgtttaacgaaatttttacatgagattaaacaataatcaaaggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaaagtctgattttgtttaacgaaatttttacatgagattaaacaataatcaaaggat 440
Query: 241 ccctttaaggtaatcacttgaatttgttaaacttataaatagaa 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctttaaggtaatcacttgaatttgttaaacttataaatagaa 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no237_j12.g1 MSMg01no237_j12.g1 CHROMAT_FILE:
MSMg01no237_j12.g1 PHD_FILE: MSMg01no237_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:27 2005
(300 letters)
>mm_chr11_37539948_37540649
Length = 702
Score = 491 bits (254), Expect = e-143
Identities = 291/304 (95%), Gaps = 6/304 (1%)
Strand = Plus / Minus
Query: 1 tgtcccctgcagaatatttgtccttagatggcagtttagcacaatgttttgccctgagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 502 tgtcccctgcagaatatttgtccttagatggcagtttagcacaatgttttggtttgagac 443
Query: 61 ttgagtaagagtttctgcatttgaatttttttttcaaaattagacttacaaatcaagtaa 120
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 442 ttgagtaagagtttctgcatttaaatttttttttcaaaattagccttacaaatcaagtaa 383
Query: 121 gaaacatgaaataatgtatgtttttctcttatgactc--gggatggcaggtaatatccac 178
|||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 gaaatatgaactaatgtatgtttttctcttatgactcaggggatggcaggtaatatccac 323
Query: 179 agattagtatgtatccctaca-ctatctatgtgcctatatgttgcatacatatgtattct 237
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 322 agattagtatgtatccctacatc-atctatgtgcctatatgttgcatacatatgtattct 264
Query: 238 gtgattgacaaagatccctcttatttattaatgctggaaaacttctt-atgtaaaaatct 296
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 263 gtgattgacaaagatccctcttatttattaatgctggaaaactt-ttcatgtaaaaatct 205
Query: 297 ggaa 300
||||
Sbjct: 204 ggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 702
Length adjustment: 9
Effective length of query: 291
Effective length of database: 693
Effective search space: 201663
Effective search space used: 201663
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
