BAC Information

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BAC

Clone NameMSMg01-260F11
Chromosome11 (Build37)
Map Location 104,197,268 - 104,197,767
singlet/doubletsinglet
Overlap gene1700081L11Rik
Upstream geneArhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt
Downstream geneCdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260F11.T7 (MSMg01no260_f11.b1)MSMg01-260F11.TJ (MSMg01no260_f11.g1)
ACCAG403034AG403035
length734805
length of high quality
(start - end)
500 (72 - 571)247 (73 - 319)
definitionCHROMAT_FILE: MSMg01no260_f11.b1 PHD_FILE: MSMg01no260_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:24 2005CHROMAT_FILE: MSMg01no260_f11.g1 PHD_FILE: MSMg01no260_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACAATATTTCCTAAAGTTCAGATTTTGAAAACAAGTCAAAG
AAAAATAGGTGGTCTCCTACCACTCTTTTAAGGAAAATGGTTCATGAGAC
TTGGAGGGCAAGCACTTCTAACTCCCTAAGTCATCTAGAATGAAGATTGC
AAAACCAGACCCCATCAAGAAGACCAACTTTTGAGGCCTTATAAATCACT
ATGATAACCAGTAGACCTTTAATCATATTACCGTGGCTACCATCCTCCCT
CATTCAATAGGTACTGGGAACCCATGCCTGCCTATTACCTGCTGCCCCGA
CGCTGGGGTGGCACACTTGTGGTCCACAGCCACCTTGCCCTTTCCATCTC
CTCACATTTGGCATGCACCGCCGCAAAGGCTGCATCAGATAGGTCCTCGA
TCTGCAACAAAGCAGTTTTATCAATCTCTTTTCCCCAGGAAGCTAAGGTT
ATGAATCAGCAGACTAAGTCTAGAATCAGTCTCGCCCCATTGAGGATGCT
GTTAGTCATAAAGAGAATACGACAAGCTGGCATATGATACCCTATGTCTT
AAGGCAGCGAGTGTTGGGGTGGGTGTGCATGTTCTTCCAAGACAGTGTAA
ATAAATAAGGTAATACCTCCTCATTCTCTTCATCAGGACTCCCCTTCAGA
GACTGAACATCAACCTCCTCGTCGCTGTAATTGG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAACCCAATCAGAGCTACATAGTGAGAC
CCTAGATGGATAGATAGATAGATAGATATAGATAGATAGATGGATAGATA
GATAAAGGGCTGGAGAGACAGTTCAGCCATTAAGAGCACTTGCTGCTCTT
GCAGAGGACCCAGGTTCTATCCTAGCACCCCATGTCAGCCTACAATGGTC
TGTAACTCCAGTACCAGAGAATCTGATGCCCTCTTTTTGCCTTAATGGGC
ATAAATGAGGCACACACATGTTTACTCTCACATATACACATAAAAATAAA
TCTTTATTAAAGGGGCTGGAGAGAGATGGCTCAGCAGTAAAGAGCACTGG
CTGCTCTTCCACACCCCCCGAGCTCCATTCCCAGCACCCATATGGACGCT
CACAACTGTCCGTAACCCCTGTTCCAGGGGACCCAACTCCCTCACCCAGA
CTTCCCTGTTATCCATTTCCCCTTGTCCCTATCCCGAACCTCATATTTTA
CCACCATTCCCAAACACCACCCCTCCGCGATATAACCACACTATTTATTG
GGATGCGCCTTTCCTATCTCCTTTCCCGGCCCATTACTTTTTTCTCTCCC
CTCGGCCCTACCCTTTCGCCCTCTTTCCTCTCTCCATCTCCTGCATGTAA
CGCTATCATACCAACCTCACCCTCTTCACCCCCTCTCCCTGTCTATCGTA
CCCCCTGTTCCTTGCCCTCCGTCACTTTCTTGCCCCTCTTTACCCGTGGG
TGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_f11.b1 MSMg01no260_f11.b1 CHROMAT_FILE:
MSMg01no260_f11.b1 PHD_FILE: MSMg01no260_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:24 2005
         (500 letters)



>mm_chr11_104197068_104197967
          Length = 900

 Score =  951 bits (492), Expect = 0.0
 Identities = 498/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagttcagattttgaaaacaagtcaaagaaaaataggtggtctcctaccactcttttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagttcagattttgaaaacaagtcaaagaaaaataggtggtctcctaccactcttttaa 260

                                                                       
Query: 61  ggaaaatggttcatgagacttggagggcaagcacttctaactccctaagtcatctagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaaatggttcatgagacttggagggcaagcacttctaactccctaagtcatctagaat 320

                                                                       
Query: 121 gaagattgcaaaaccagaccccatcaagaagaccaacttttgaggccttataaatcacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagattgcaaaaccagaccccatcaagaagaccaacttttgaggccttataaatcacta 380

                                                                       
Query: 181 tgataaccagtagacctttaatcatattaccgtggctaccatcctccctcattcaatagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgataaccagtagacctttaatcatattaccgtggctaccatcctccctcattcaatagg 440

                                                                       
Query: 241 tactgggaacccatgcctgcctattacctgctgccccgacgctggggtggcacacttgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactgggaacccatgcctgcctattacctgctgccccgacgctggggtggcacacttgtg 500

                                                                       
Query: 301 gtccacagccaccttgccctttccatctcctcacatttggcatgcaccgccgcaaaggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 501 gtccacagccaccttgccctttccatctcctcacatttggcatgcagggccgcaaaggct 560

                                                                       
Query: 361 gcatcagataggtcctcgatctgcaacaaagcagttttatcaatctcttttccccaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcatcagataggtcctcgatctgcaacaaagcagttttatcaatctcttttccccaggaa 620

                                                                       
Query: 421 gctaaggttatgaatcagcagactaagtctagaatcagtctcgccccattgaggatgctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctaaggttatgaatcagcagactaagtctagaatcagtctcgccccattgaggatgctg 680

                               
Query: 481 ttagtcataaagagaatacg 500
           ||||||||||||||||||||
Sbjct: 681 ttagtcataaagagaatacg 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)