BAC Information

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BAC

Clone NameMSMg01-260K01
Chromosome11 (Build37)
Map Location 10,482,352 - 10,482,739
singlet/doubletsinglet
Overlap genenone
Upstream geneAbca13, LOC665435, LOC382483
Downstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260K01.T7 (MSMg01no260_k01.b1)MSMg01-260K01.TJ (MSMg01no260_k01.g1)
ACCAG403239AG403240
length867738
length of high quality
(start - end)
---388 (85 - 472)
definitionCHROMAT_FILE: MSMg01no260_k01.b1 PHD_FILE: MSMg01no260_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:47 2005CHROMAT_FILE: MSMg01no260_k01.g1 PHD_FILE: MSMg01no260_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAAATCCGCGTGAA
TTCCATGGTTCTGTCCCTTAGATAATTTATCTGTTTTAAATTTTGATTTA
TCTCCATTTACTGTATTTAGTTGCTTTTTGCATTCCAGACATTCTCTGGA
GATGTAAGTATTTCTGATATTCTGTATCACCAATGCTGCGCGAGCTGTAG
TGCTATGGACGCGTTATTTAATGGCGGTGTGGATGGAGAAGCGTAGTATC
TACTATGTGGGAAGAGTAGAAGTGTCGGAGGGCTGAGTTAGCCACCGTGT
AGTCGTGGATCCCGTGGATGACGTGTTGATATTATTTGTTGGACAGGATA
TGAGGTTTTGGAAAAATTATGGGGGACAGTGCGGACGCGTATGACGGGTG
TGGTGTGGTCGCTTGTTTGTTTGTATTGTCGGCCCTTGATATTATTGGTG
TTGGTTGTTGTTGTTATAATTATTTGCGTGGTGCGATGCGGGGGGTTTTG
TGAATGTGATGGTAGCTTTGTATGTGAGGAGGGATGTGGAGGGGTATATC
AGTCTGTTTGGTTGTTGCGAATATGGAGGATGGGGTATGTTGCAGGGATA
AGTGAGACATATATACGTGGTATGCTCCTTAGTGTTGGTTGGGGCATACG
TGCGTGGTGTAGTGTACTGTCAGACGAGTTGGGCATGTAGACAGCGGATG
TGCTGGCTGACTAATGTGTGATGCATGATGGGGGAGGATGTTTATGCTTT
ATACTGGTTCGGCTGGTCGCGTAGGTGTAGATGAGTATAGTGCTCAGCGT
TGGGCTCTTGTTGATTGTGATGTATTCTATGTGTTGACTACGTTGTCGAG
AATTATGTGTTGATGGN
CCCCCNTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAAATTACCAAGGG
GCCACGGCAGAGGGGTTCCATGAGGGGAGATGGAAAAAATGGTATAAAAC
CTTAAGTGGGATTAAGGGAACAGGAGAAGTTAAGTTGGAATAGGAAGTGG
CAAGTTAGGAAATGTATGGAATTTGTTAAAGAATAAATAACTTATGGCCT
TATTAAACCTTATGAAAACTTCTTGTTGAAACCTACCTACTATTGTATGT
TTCCTAAAATATATACGTGTACATACATATTCTGAGAACAAAAGGTTAAA
TCAATTTACCCTTTAATGGCAACTACACCCCCACTTTGTACCAAATCTAT
TTGAATATCGTTAATCTAACAGAGGCAACACCTCCAAAGAAAGCTAATTC
TACCACTTCCAACATTTATCAAGGCCAGAAAACAGTCTTATTTTAATCAT
ACACTGTCTCTGGCTTTTAAAATCTTTAAGTCCCCTGCTTCCATAATGAT
TTCTTGATCTTGTGTCTTGGGAAAATGGAGATGTAATACAGAGGCACTCT
TCATGTCCAGGTATTCTGCACGCTCATTTGCTATTCCTTGACCAGTTATA
GATCCCACACTTAACTGCCATTTATTGTAAAAAGACAATTCTCTACTGAG
AATGAGAGTTGAGATATGCCCTATTATCTGATTAATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_k01.g1 MSMg01no260_k01.g1 CHROMAT_FILE:
MSMg01no260_k01.g1 PHD_FILE: MSMg01no260_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:47 2005
         (388 letters)



>mm_chr11_10482152_10482939
          Length = 788

 Score =  719 bits (372), Expect = 0.0
 Identities = 384/388 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaaattaccaaggggccacggcagaggggttccatgaggggagatggaaaaaatggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 agaaaattaccaaggggccacggcagaggggttccatgaggggagatggaaaaaatggta 529

                                                                       
Query: 61  taaaaccttaagtgggattaagggaacaggagaagttaagttggaataggaagtggcaag 120
           |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 528 taaaaccttaagtgggattaagggaacaagaggagttaagttggaataggaagtggcaag 469

                                                                       
Query: 121 ttaggaaatgtatggaatttgttaaagaataaataacttatggccttattaaaccttatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttaggaaatgtatggaatttgttaaagaataaataacttatggccttattaaaccttatg 409

                                                                       
Query: 181 aaaacttcttgttgaaacctacctactattgtatgtttcctaaaatatatacgtgtacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aaaacttcttgttgaaacctacctactattgtatgtttcctaaaatatatacgtgtacat 349

                                                                       
Query: 241 acatattctgagaacaaaaggttaaatcaatttaccctttaatggcaactacacccccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 acatattctgagaacaaaaggttaaatcaatttaccctttaatggcaactacacccccac 289

                                                                       
Query: 301 tttgtaccaaatctatttgaatatcgttaatctaacagaggcaacacctccaaagaaagc 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 288 tttgtaccaaatctatttgaatatagttaatctaacagaggcaacacctccaaagaaagc 229

                                       
Query: 361 taattctaccacttccaacatttatcaa 388
           |||||||||||||||||| |||||||||
Sbjct: 228 taattctaccacttccaatatttatcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)