BAC Information

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BAC

Clone NameMSMg01-261H08
Chromosome11 (Build37)
Map Location 92,282,047 - 92,282,551
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664976, Kif2b
Downstream geneLOC382545, LOC100039286, Car10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261H08.T7 (MSMg01no261_h08.b1)MSMg01-261H08.TJ (MSMg01no261_h08.g1)
ACCAG403840AG403841
length725720
length of high quality
(start - end)
535 (41 - 575)505 (70 - 574)
definitionCHROMAT_FILE: MSMg01no261_h08.b1 PHD_FILE: MSMg01no261_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:51 2005CHROMAT_FILE: MSMg01no261_h08.g1 PHD_FILE: MSMg01no261_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGTAGGCTTCTTGCATGCTCATGGGCATCTCTTTCTTTAGGTTAGGGAAG
TTTTCCTCTATAATTTTGTTGCAGATATTTACTGGCCCTTTAAGTTGAAA
ATCTTCATTCTCATCAATACCTATCATCCTTAGGTGTGGTCTTCTCATTG
TGTCCTGGATTTCCTGTATGTTTTGAATTAGGATCTTTTTGCACTTTGCA
TTTTCTTTGATAGCTGTGTCCATGTTTTCTATGGTATCTTCTGCACCTGA
GATTCTCTCTTCCATCTCTTGTATTCTGTTGGTGACACTTGCACCTATGG
CTCCTGGTTTCTTTCCTAGGATTTCTATCTCCATAGTTGTCTCCCTTTGT
GATTTCTTTATTGTTTCTACTTCCATTTTTAGATCCTGGATGGTTTTGTT
CAATTCCTTCACCTATTTGGTTGTGTTTTCCTGTAATTCCTTTAAGGGTT
TCCTCTTTAAGGAGCTCTACCTGTTTAGCTGTGTTCTCCTGTATTTCTTT
AAGGGAGTTATTAATGTCCTTCTTAAAATCCTCTACCAGCATCATGAGAT
ATGATTTTACATTTGAATCTTTGTTTTTCTTGTTCCTTACGGCATTTAGG
ACTCCCTGTGGTGGGACCACTGAATTCTGATGATGCCAAGCAATCCTTGG
TTCCTGTTGGTAAGAATCTTTGTCT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTGTTGTTGCTCCTCAAGAACTAAACACAG
TTCTCTTTAGCTGTTTTGTTTGTTTGTTTGTTTGTGGCCCTTGTGCCTTT
TTTCTTTAGCTGCTTTACAGAACTAGTGATTGAGTTTTGTATGGCAAGTT
TCAAACAAGCTTTCAGTGTTCGGTAGGGACAATAACAACAAAAAAGGCAA
ACATATGCTGAGAATCAAACATCTCATGACGTTCAGGATTCTTGTGAATT
TCTACAGTGTCAGTACAAGATCACCTCTGAGGATCCATGGAATTTTATGC
TCATTGCAGGCATCAAAAATGAAAGAGCAATTGTATTCACTAGACTGTCT
ATACTGCTATGAATGAAGCAGCCTGCTTATAGAAGTGTGCCCTGGCAGAC
ACTCTAGTATGATAGACTACTCTAAATAGTAGTAGCTATTTTATATACTC
AGACTTTTATTTTCATCAAACAAACATTCTTCTTGAACTCACCTAAACAT
AAAGAAAATATTGAATCTCCACTAGTAAAGGATATTAATTCTTGAAAGTA
ACAGAGATAAAAATCTGGCAGATTTTTCCTCTGCTGTTTTGCTTACTGCC
TTATTTTTCTGTGATTGGAGACTTTTAATTCCAGGTGTCCATGGGATATG
AAGGCTAAATCCTGAAATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_h08.g1 MSMg01no261_h08.g1 CHROMAT_FILE:
MSMg01no261_h08.g1 PHD_FILE: MSMg01no261_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:51 2005
         (505 letters)



>mm_chr11_92281847_92282751
          Length = 905

 Score =  930 bits (481), Expect = 0.0
 Identities = 499/505 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgttgttgctcctcaagaactaaacacagttctctttagctgttttgtttgtttgttt 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 attgttgttgctcctcaagaactaaacacagttcactttagctgttttgtttgtttgttt 260

                                                                       
Query: 61  gtttgtggcccttgtgccttttttctttagctgctttacagaactagtgattgagttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttgtggcccttgtgccttttttctttagctgctttacagaactagtgattgagttttg 320

                                                                       
Query: 121 tatggcaagtttcaaacaagctttcagtgttcggtagggacaataacaacaaaaaaggca 180
           | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 tgtggcaagtttcaaacaagctttcagtgtttggtagggacaataacaacaaaaaaggca 380

                                                                       
Query: 181 aacatatgctgagaatcaaacatctcatgacgttcaggattcttgtgaatttctacagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacatatgctgagaatcaaacatctcatgacgttcaggattcttgtgaatttctacagtg 440

                                                                       
Query: 241 tcagtacaagatcacctctgaggatccatggaattttatgctcattgcaggcatcaaaaa 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaatacaagatcacctctgaggatccatggaattttatgctcattgcaggcatcaaaaa 500

                                                                       
Query: 301 tgaaagagcaattgtattcactagactgtctatactgctatgaatgaagcagcctgctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaaagagcaattgtattcactagactgtctatactgctatgaatgaagcagcctgctta 560

                                                                       
Query: 361 tagaagtgtgccctggcagacactctagtatgatagactactctaaatagtagtagctat 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagaagtgtgccctggtagacactctagtatgatagactactctaaatagtagtagctat 620

                                                                       
Query: 421 tttatatactcagacttttattttcatcaaacaaacattcttcttgaactcacctaaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 tttatatactcagacttttattttcatcaaacaaacattcttcttgaacccacctaaaca 680

                                    
Query: 481 taaagaaaatattgaatctccacta 505
           |||||||||||||||||||||||||
Sbjct: 681 taaagaaaatattgaatctccacta 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)