BAC Information

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BAC

Clone NameMSMg01-262B14
Chromosome11 (Build37)
Map Location 29,575,971 - 29,576,202
singlet/doubletsinglet
Overlap genenone
Upstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403
Downstream geneRtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262B14.T7 (MSMg01no262_b14.b1)MSMg01-262B14.TJ (MSMg01no262_b14.g1)
ACCAG404299AG404300
length759729
length of high quality
(start - end)
234 (74 - 307)347 (71 - 417)
definitionCHROMAT_FILE: MSMg01no262_b14.b1 PHD_FILE: MSMg01no262_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:39 2005CHROMAT_FILE: MSMg01no262_b14.g1 PHD_FILE: MSMg01no262_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCAAATCCGCGGAAT
TCCTCTTAGGTATTACCATGAGAGTGTTCTCAGGCTTCTGAGGGGCAGAC
ACTTTCCTTTTACACATTTCAAAGCAACAAAATAGAGAAAAAGAAAACCC
ACATGGACCTGGCTGAACTCAGCAGTCTGCTTTACTCATTTCTCATCTCT
CATCTCTAGAAGCAATATGCAAACTGTGAAAAGCTGAGTAGATTTGCAAA
TATTTTCATGAAAACTGTATTCAAGTCAGTGACTTGGTCATATATATCAA
TCAAAATATAGGCAATAACGCCTGTTTAGCTCTTATCAAAGTTTAAAAAA
AAAAAGAGGAATTCCACAAAGGCCTGAGCGACTTGAACAATTCCATCACC
ATACATATTTTAATAGTGTATTACTCTGATTTTTTTCCTCTATTTCTCCT
TTTCTCTCTCTCCTACCCAATCCTTTTTATTATTTCTAGAAAAGATTTTT
TTTTACAATTATTCACTTATCTATTCATTATATGCAACTAAACTGTATAT
GCCATTTAAACTTTTTTAACCAAAATAAAAAATAATATAATATCTCTCTC
TCACACTCTAACTTATATTTTATCATCTTTATTCACTCCCTTCATATATT
TTTTTATTAAACAATAATCCCTTTCTATTTATATTTATATTCTCTTACAT
TTTTCTTGTTTTTTTAACTTATCTTGATGGTTGCTCAAAATACTCCCTTC
TTTCTTTTT
CATGCTGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCTAATTCCAGGCTAGCCATGACAACAGCGTGAGAGC
CTGTCTCAAAACTTAAAAAACAATTAAGGATATTTGTGTGTGTTAGGGTT
TCACTGCTGTGAAGAGATGCCATGACTAAGGCAACTCTCATCATCAAGGT
GGGAGCATGGCAGCATCTAGGCAGGCATGGTGCTGGAGAAGCTGAGAGTT
CTACAACTTGTTCTGAAGATAAACAGAAGACTGGCTTCCAGACAGTTAGG
AAAAAGGTCTCTCAAAGCATCCTTATAATGACACACTTCCTCCAACAAGG
CCATACCTCCTAATAGTGCAATTCCCTGGGCCAAGCATCTTCAAACCACC
ACAATGTTTAATTCATAGCTGGAATGATGGCTCATTGGTTAAGAGAGTAC
TTGCTGTACTTGCAGAGGACCTGCATTCCTAACCCATATATGGTAGCAAA
GTGATAGTCTTAGTATTGATAATCTCTAATTATTCCACAATATTGATCTA
TTCTGAAAAACTCTGAAGATTCTCCAATTCCTGCATGATCCATTATTCCC
TACAATTCTATCTCATATGTAAACATAAAGCACTTCCACTGTATTGCTAC
ATAACTTTTCATTCATCCTTAACAACATTATCGCATATCCTCGCATTCAC
ACTTTATAATTTTCACAGTCTTGATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_b14.b1 MSMg01no262_b14.b1 CHROMAT_FILE:
MSMg01no262_b14.b1 PHD_FILE: MSMg01no262_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:39 2005
         (234 letters)



>mm_chr11_29575771_29576402
          Length = 632

 Score =  422 bits (218), Expect = e-122
 Identities = 230/234 (98%), Gaps = 2/234 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgttctcaggcttctgaggggcagacactttccttttacacatttcaaagcaacaaaat 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gtgttctcaggcttctgagaggcagacactttccttttacacatttcaaagcaacaaaat 373

                                                                       
Query: 61  agagaaaaagaaaacccacatggacctggctgaactcagcagtctgctttactcatttct 120
           ||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct: 372 agagaaaaagaaaacccacat-gacct-gctgaacttagcagtctgctttactcatttct 315

                                                                       
Query: 121 catctctcatctctagaagcaatatgcaaactgtgaaaagctgagtagatttgcaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 catctctcatctctagaagcaatatgcaaactgtgaaaagctgagtagatttgcaaatat 255

                                                                 
Query: 181 tttcatgaaaactgtattcaagtcagtgacttggtcatatatatcaatcaaaat 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tttcatgaaaactgtattcaagtcagtgacttggtcatatatatcaatcaaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 632
Length adjustment: 9
Effective length of query: 225
Effective length of database: 623
Effective search space:   140175
Effective search space used:   140175
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)