Query= MSMg01no262_b17.b1 MSMg01no262_b17.b1 CHROMAT_FILE:
MSMg01no262_b17.b1 PHD_FILE: MSMg01no262_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:40 2005
(544 letters)
>mm_chr11_16148395_16149339
Length = 945
Score = 928 bits (480), Expect = 0.0
Identities = 526/542 (97%), Gaps = 3/542 (0%)
Strand = Plus / Plus
Query: 5 gaattctaacttctccattctaaacattacaacttcaaaatttctaacttcaaagtatta 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaacttcaaaattctaaacattacaacttcaaaatttctaacttcaaagtatta 264
Query: 65 aataatagattacctatttgaaatatggtatggagtggtctaagccagatgtggttgttt 124
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 aataatagattaaatatttgaaatatggtatggagtggcctaagccagatgtggttgttt 324
Query: 125 gaaactcatgtagttcagtctcgaacataacagtctttattttcaatgatccttctaatt 184
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaactcatgtagttcagtctcaaacataacagtctttattttcaatgatccttctaatt 384
Query: 185 tttggtgccttatcattgaacaaaatatccaatgtctcactatcctcacttagttacctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttggtgccttatcattgaacaaaatatccaatgtctcactatcctcacttagttacctc 444
Query: 245 agccttcagatgaagatgatgcttttaaaattctgaaatttgagcaaattgaagtttgtt 304
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 agccttcagatgaggatgatgcttttaaaattctgaaatttgagcaaactgaagtttgtt 504
Query: 305 ggttggttggttcattcgtttttatctaaagtggatatatttcaattgttgacttcattg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggttggttggttcattcgtttttatctaaagtggatatatttcaattgttgacttcattg 564
Query: 365 tctcccacaatcattgttccacaggaataactcacttggatactatgccccaccactttt 424
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctcctaaaatcattgttccacaggaataactcacttggatactatgccccaccactttt 624
Query: 425 tttt--aagctgttttactccatcactcccaagacagtagtcagttggttccttcaaaaa 482
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 625 tttttaaagctgttttactccatcactcccaagacagtagtcagttggctccttcaaaaa 684
Query: 483 ctccatcctatcttctattctgacactctttttagccccttcttctcttctacatcctca 542
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 685 ctccatcctatcttctattctgacact-tttttagccccttcttctcttctacgtcctca 743
Query: 543 aa 544
||
Sbjct: 744 aa 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 945
Length adjustment: 10
Effective length of query: 534
Effective length of database: 935
Effective search space: 499290
Effective search space used: 499290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_b17.g1 MSMg01no262_b17.g1 CHROMAT_FILE:
MSMg01no262_b17.g1 PHD_FILE: MSMg01no262_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:40 2005
(616 letters)
>mm_chr11_16331651_16332666
Length = 1016
Score = 1100 bits (569), Expect = 0.0
Identities = 605/617 (98%), Gaps = 2/617 (0%)
Strand = Plus / Minus
Query: 1 tgggtgtggagaggcttaagcaagaagggatataggaatgtggggaatattgagatgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tgggtgtggagaggcttaagcaagaagggatataggaatgtggggaatattgagatgaag 709
Query: 61 cagaagaagattaacccaaaggaaggggttatgaaaaactacattgaagattactatctc 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 cagaaaaagattaacccaaaggaaggggttatgaaaaactacattgaagattactatctc 649
Query: 121 agaacatgattatgtgtgtatacagaacactcatctacataaaataaattttaaactaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 agaacatgattatgtgtgtatacagaacactcatctacataaaataaattttaaactaaa 589
Query: 181 aataatgaaaaacataactgtccaattatagacagtaggacacatgctataagaaagaag 240
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 588 aataatgaaaaacataattgtccaattatagacagtaggacacatcctataagaaagaag 529
Query: 241 gcatggggtaaaatactggggttaaaaaattaagctggcaactttaagctgtataaggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gcatggggtaaaatactggggttaaaaaattaagctggcaactttaagctgtataaggag 469
Query: 301 aaatgagaagggttatatat-agaacttttttattctttgaaaaaataacgctttgttat 359
|||||||||||||||| | | |||||||||||||||||||||| ||||| ||||||||||
Sbjct: 468 aaatgagaagggttatgt-tcagaacttttttattctttgaaataataaagctttgttat 410
Query: 360 attttaaaaacttaagctatcatgaggatagagggatgctagagagtaggaagtaatgag 419
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 409 atttaaaaaacttaagctatcatgaggatagagggatgctagagagtaggaggtaatggg 350
Query: 420 tgtgccaacataaactaagaatgtatgaaaaagcctcatggaaacctactatctagtaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tgtgccaacataaactaagaatgtatgaaaaagcctcatggaaacctactatctagtaaa 290
Query: 480 ctaatttcagaatacaacatctaaaaagaaagaaaaagtgtttgaatgaaattctcctgc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ctaatttcagaatacaacatctaaaaagaaagaaaaagtgtttgaatgaaattctcctgc 230
Query: 540 agaggttgacaatatcactcaaagaagaaaagaatctattaaatgaaaatcttactatat 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 229 agaggttgacaatatcactcaaagaagaagagaatctattaaatgaaaatcttactatat 170
Query: 600 aacatgggatacctcca 616
|||||||||||||||||
Sbjct: 169 aacatgggatacctcca 153
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
