BAC Information

Click to search

BAC

Clone NameMSMg01-262J24
Chromosome11 (Build37)
Map Location 5,914,137 - 5,914,441
singlet/doubletsinglet
Overlap geneCamk2b
Upstream geneAp1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, LOC100042156
Downstream geneNudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262J24.T7 (MSMg01no262_j24.b1)MSMg01-262J24.TJ (MSMg01no262_j24.g1)
ACCAG404674AG404675
length725726
length of high quality
(start - end)
306 (73 - 378)502 (74 - 575)
definitionCHROMAT_FILE: MSMg01no262_j24.b1 PHD_FILE: MSMg01no262_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:19 2005CHROMAT_FILE: MSMg01no262_j24.g1 PHD_FILE: MSMg01no262_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGGATACGCGGA
ATTCATAGAGGTCTATCCCACTCTGTCTCCCGGCTGCTCGGATTAAAAGT
GCCCACCACTGCACCTAGCACAGAGCTTATCCTCTTGATAGGCAGGTGCC
TGGACCTGCCCTGGAGAGCTGACTTAGGAAGTCTGGGTAGGCCTGGAACC
TGGGTCTCAACAGTGACTATAGGACTGCAGGGCCATGCCACTGGGTGCCT
GCAGCTGAGTACCAAGAGCCTGACACCTCACCAGTGCACCTCTTCTTGGA
GATCATGGGCGATGACATCCAATTCTTTCTCCATCAGTGCCTCTAAGCCC
TTGCTTACCCACTCCCAACTAAGCAGCACCCAAGAGCTAGAACTCATTGT
GCCTGTGTTTTCATGAACTGCCTTATTTGGGTGGTGGATGCCCAGATGTG
TTTTATGTTATTTTGTTTAGTTCTTCAATAAGATGTCTCCCAGTAGCCTG
ATGTGATTCCCAGTGGGTTCTGAGCAGTGACTTGACTCCGGCTTCCTGTG
TGGCCTCGGGGGTAAAGGGGCCATTGGAAGTCCTTGCAGCAGCTTCATTT
CAGTCAGGTTAGGACTCAAAACCAGAACATTCCAGAAGGTAGATTCGAGA
CTATGAGGCCCCTGTGGAACCTTCTCTGAAGATTCAGGGGTTCTCTGAGG
AGGAGAGGGGGACTACTATAGTTGT
CATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCCAATTCTCAGCTATTTCTCTAGTACCATGTTCCC
TGCCATGATGATAATGGTCTAAACCTCTGAAACTGTAAGCAAGCGCCAAT
GAAATGCTTTAATGCTTTTCTCTGTGAGAGTTACCATGGTCATGTGTCTC
TTGACAGCAAGACAACACTAAGACCACCGACTTCTAGCATCCCAGAAACA
GTGAAAGATAATAATGACCTCAGGGATAAAACGGACCGGCTCCAGACGCA
CATAAACATCCCAAGTCCTTCTAAGTGTGTCCTGGGGGAGAGCCTTCTCA
ACAGCCAAGCTGCATAAAGTCAAACTAAAGCCTTCATTGTAAGTTTGGAT
AAATTACAAAGAAAATCCAAGTCCCCGCCTCAGAGGGTGTTGGCAGCTAA
AGTAAGTGTCTTAGTTAAGAGTTTTACTGCTGTGAACAGACACCATAACC
AAGGCAAGTCTTATAAAGGATGACGTTTAACTGGGGCTGGCTTACAGGTT
CAGAGGTTCAGTCCAGGAACATGGCAGCATCCAGGCAAGCATGGTACGGG
AGGAGCTGAAAGTTCTACATCTTCATCTGAAGGCTGCTATCAGAATACTG
TCTTCCAGGCAGCTAGTATGAGGTCTTAAAGCCCACACCAACAGTGACAC
ATCTACTCCAACAAAGCCATGCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_j24.b1 MSMg01no262_j24.b1 CHROMAT_FILE:
MSMg01no262_j24.b1 PHD_FILE: MSMg01no262_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:19 2005
         (306 letters)



>mm_chr11_5913937_5914641
          Length = 705

 Score =  538 bits (278), Expect = e-157
 Identities = 299/308 (97%), Gaps = 5/308 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtctcccggctgctcggattaaaagtgcccaccactgcacctagcacagagcttatcc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 ctgtctcccggctgctcggattaaaagtgcccaccactgcacccagcacagagcttatcc 446

                                                                       
Query: 61  tcttgataggcaggtgcctggacctgccctggagagctgacttaggaagtctgggtaggc 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcttgatagacaggtgcctggacctgccctggagagctgacttaggaagtctgggtaggc 386

                                                                       
Query: 121 ctggaacctgggtctcaacagtgactataggactgcagggccatgccactgggtgcctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggaacctgggtctcaacagtgactataggactgcagggccatgccactgggtgcctgc 326

                                                                       
Query: 181 agctgagtaccaagagcctgacacctcaccagtgcacctcttcttggagatcatgggcga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agctgagtaccaagagcctgacacctcaccagtgcacctcttcttggagatcatgggcga 266

                                                                       
Query: 241 tgacatccaattc--tttctccatcagtgcctctaagcccttgcttacccactcccaact 298
           |||||||||||||     |||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 265 tgacatccaattcag---ctccatcagtacctctaagcccttgcttacccactcctaact 209

                   
Query: 299 aagcagca 306
           ||||||||
Sbjct: 208 aagcagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 705
Length adjustment: 9
Effective length of query: 297
Effective length of database: 696
Effective search space:   206712
Effective search space used:   206712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)