BAC Information

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BAC

Clone NameMSMg01-263D22
Chromosome11 (Build37)
Map Location 50,136,439 - 50,136,552
singlet/doubletsinglet
Overlap geneCanx
Upstream geneOlfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1
Downstream gene1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263D22.T7 (MSMg01no263_d22.b1)MSMg01-263D22.TJ (MSMg01no263_d22.g1)
ACCAG405122AG405123
length741845
length of high quality
(start - end)
299 (71 - 369)114 (78 - 191)
definitionCHROMAT_FILE: MSMg01no263_d22.b1 PHD_FILE: MSMg01no263_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:06 2005CHROMAT_FILE: MSMg01no263_d22.g1 PHD_FILE: MSMg01no263_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGACAGTCCCGGGCTATACAGAGAAACCCTGGTCTTGAAAAA
CCAAAAAAAAAAAAAAAACAAAACAAACCAACAAAAAAAAAAACAGGCTG
GGCAGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAAAGGCAG
GCAAATATCTGAGTTTGAGTCCAGCCTGGTCTACAGAGTGAGTTCCAGGA
CAGCTGGGGCTATACAGAGAAACTCTGTCTCGAAAAACAAAAACAAACAA
ACAAAAAAATTATGCCAGGAGTAGTAATATGCCCTTTTACCATGGCACTT
GGGAGGCAGAGGCCAGCATATCCTGTGACTCTGAACACAGCTTGGTCTAT
GTGACAGATTCACTGAGTTCAGCCCAACGAATGTAAAAAAGAAAAGCCAG
GCAGTGGTGGCGCATGCCTTTAGTTCCAGCACTTGGGAGATAGAGGCAAG
TGGATTTCTGAGTTCGAGGACAGCCAGGACTGCACAGAGAAACCCTGTCT
CGAAAAACAAACAAGAAAAAAAAAAAAGAAAAAGAAAAGGAAAAGGAAAG
AAAAGAGAAAAAGAAAAAGCAAGTTACAGAAGCCAGTGCACCTTCCATTA
CACTCAAACTCTGGGCAAACGAGGATGCCCTAAGCATGTCCTACCTACTC
CTAGGAAAGGCCTTGGGGTACGCAAACCTGTCCTTGGGCCC
NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACTCTTAATCACTGAGCCATCT
CTCCATCCTGCGTATTCACATCTTAAAGTGAATTAATAGGAAAAAGTTTC
TTTTAAAAAAAATCACTTATTAGCTGGGTGGTGTGGTGGTGCTTCCCCTC
TCGTCCCTCGCCCCCCTTTCCTCACCCCGCCCCCCCTCCGACCTCCATAC
CTCCCGGTCCCTCCCTCTCCCTCCCTCTCCCGCCCCCCCCTCCTCCCATC
CCCCCCCGCCCCCCTCCTCCCGCCCTCTTTCTTTTTCGCCACATCTCTGC
CTCCCCCCGTCAATTGCTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCT
TTCTTCTCTCGCCGTCCGTCTCTTTTTTTCCCCCCCCCCCTCCCCCTATT
CCCTCACCCCTCTTCTCCCCTCCTCCCTCTCCCTCTCCCATTCCCTCTTC
TCTCTCTCCTTTACTTCTTCCCTTCATCCCTCCTCCCTCCCCTTCCTCCT
TTCTCTCTCCCTCCCCTCCCCTCTTCCTTTCCTTCCCTATCCCTTCCTCT
TTTTCCCCTTACCTCTATTTTCCCCCCCTCCATCCTATCATCTCCCCCTC
CTTCCTCCCCTCGTATTTCTCCTTCTCTCTTCTCCCTCTCCCTTCTTCCC
CTCCTCTTTTTCTTTCCTTCTCCAACTCTTCCCTTCCTTCGCCCCCTCCC
ACCCTCTCTTTTCCGCCTCTACTTTTCTACTCCTTCTTGCCCTCTTCCTA
TCTTCTCCCTCCTTCCCCTCACCTTTACTTCCGCCTCTCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_d22.g1 MSMg01no263_d22.g1 CHROMAT_FILE:
MSMg01no263_d22.g1 PHD_FILE: MSMg01no263_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:06 2005
         (114 letters)



>mm_chr11_50136239_50136752
          Length = 514

 Score =  221 bits (114), Expect = 1e-62
 Identities = 114/114 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactcttaatcactgagccatctctccatcctgcgtattcacatcttaaagtgaattaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aactcttaatcactgagccatctctccatcctgcgtattcacatcttaaagtgaattaat 255

                                                                 
Query: 61  aggaaaaagtttcttttaaaaaaaatcacttattagctgggtggtgtggtggtg 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aggaaaaagtttcttttaaaaaaaatcacttattagctgggtggtgtggtggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)