BAC Information

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BAC

Clone NameMSMg01-263H11
Chromosome11 (Build37)
Map Location 51,113,785 - 51,114,096
singlet/doubletsinglet
Overlap geneCol23a1
Upstream geneCanx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4
Downstream geneAgxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263H11.T7 (MSMg01no263_h11.b1)MSMg01-263H11.TJ (MSMg01no263_h11.g1)
ACCAG405281AG405282
length735753
length of high quality
(start - end)
315 (51 - 365)465 (75 - 539)
definitionCHROMAT_FILE: MSMg01no263_h11.b1 PHD_FILE: MSMg01no263_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:23 2005CHROMAT_FILE: MSMg01no263_h11.g1 PHD_FILE: MSMg01no263_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGAACCCCACAGGGACAGCCATTGACTGAACCTATTGAGG
TAGTATTAAGAGATGGAGTAGTGGCAGGAACTGAGGTAGTACATACATGT
CTGCATGAAAAGAGCAGGTCAGATCTTAGGGGCCTCAGCTCTCCTCCATA
CCTGGCAGGACTTCGTGGAACAGGTAAAGAGTATTTAGAGAAAAGAGCGA
GAAGCTTGTGGAAACCTGGGATGAGAGACAGGATTTCTCTGAAAGTGGAG
GATTGTCCCAGCTCTGACGGGTCCTGAATGCATAGAACAGTGGGAGTCAG
CCTGGAATGTAGGTCGGTGTTAGGGCACTTGCCGACCATGCACGAGCCTT
GGGCTCAATCTTCAGTGCCATCACACAAATTTAAACAGGCCAGTAGGAGC
CAGGGCTTGGAACCGACAAAGTAGCCCTGCTTGGCTGAACTCGAGGCAGG
CTCCTAATGTGCCGGCTAGACCCATATGTCCATGTCCTGGTAAAATCCAA
CCTCTAGCAAAGAACTGTGTTGTTGTTGCAGTAAGGAGCTACCGATCGGA
AGTGGGGCCAGTTCCCCAGTCCCGGTGTGAGGCAGCTTTCTGGATACAGA
TAATGAATGCATACTGATATCTGTATATATATAACATGTACAAAATAATG
CCCGCATTGCAGAACCGATTCCCAGTTAAGAGCTN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCATGATCTTGCTCAAGGACA
TTTCTAGGACTGTTGGAACACTCGCGCGGGAGGCTTTAGCCATGTCAGAA
TTCAACTTTAAAAAGCACTTAGAATAGGAAAATACTGAAAGAGAGCACGT
GGATCCATACACTAGACTAACTCGGGAATGGAAAATTAATGTATGGGTAG
GGAATGCTAGACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCAT
GAGTGACTTTTAAGCCTTTCGGCTTGTCCAGCTGACTCGACCGGAGAGCA
TAGCAATCCCAGGTTAGCTTTCTGTCCTGACCCCCCTGTCTCCTCTCAGA
CAAACTTTTTCAGGCAACTCTCAGCTACTGATTACTCAGATGTTCATAGA
AGGCCAGGTGGTGGTGGTGCATATCTTTAATCCCAGCACTTGGAAAGAAG
AGGTGAATGGATCTCTGTGGGTTTGAGGTCAGTCTGGTCAACAGGGTGAG
TTTGAAGACAGCCAGGGCTGCAATGCAGAAATTAAAGAAAGTAATACAGG
TTATGATAGCAAGAAAAAGCAATATTCCTCCAAGTGATTTAACGAAATAG
TTAAAGGCTTCCATATAATATCACGAATAGATATATGAGGTATACACTAA
TGGGAAAAGCAGAAATATAATCAAAGCCCCTCAAAAGCCGGTACTACTGT
AAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_h11.b1 MSMg01no263_h11.b1 CHROMAT_FILE:
MSMg01no263_h11.b1 PHD_FILE: MSMg01no263_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:23 2005
         (315 letters)



>mm_chr11_51113582_51114296
          Length = 715

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgaaccccacagggacagccattgactgaacctattgaggtagtattaagaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattctgaaccccacagggacagccattgactgaacctattgaggtagtattaagaga 456

                                                                       
Query: 64  tggagtagtggcaggaactgaggtagtacatacatgtctgcatgaaaagagcaggtcaga 123
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 455 tggagtagtggcaggaactgagggattacatacatgtctgcatgaaaagagcaggtcaga 396

                                                                       
Query: 124 tcttaggggcctcagctctcctccatacctggcaggacttcgtggaacaggtaaagagta 183
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 395 tcttaggggcctcagctctcccccatacctggcaggacttcgtggaacaggtaaagggta 336

                                                                       
Query: 184 tttagagaaaagagcgagaagcttgtggaaacctgggatgagagacaggatttctctgaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tttagagaaaagagcgagaagcttgtggaaacctgggatgagagacaggatttctctgaa 276

                                                                       
Query: 244 agtggaggattgtcccagctctgacgggtcctgaatgcatagaacagtgggagtcagcct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agtggaggattgtcccagctctgacgggtcctgaatgcatagaacagtgggagtcagcct 216

                       
Query: 304 ggaatgtaggtc 315
           ||||||||||||
Sbjct: 215 ggaatgtaggtc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)