BAC Information

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BAC

Clone NameMSMg01-263L20
Chromosome11 (Build37)
Map Location 97,326,150 - 97,326,439
singlet/doubletsinglet
Overlap gene4933428G20Rik
Upstream geneSkap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7
Downstream geneP140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263L20.T7 (MSMg01no263_l20.b1)MSMg01-263L20.TJ (MSMg01no263_l20.g1)
ACCAG405479AG405480
length731730
length of high quality
(start - end)		673 (47 - 719)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no263_l20.b1 PHD_FILE: MSMg01no263_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:44 2005CHROMAT_FILE: MSMg01no263_l20.g1 PHD_FILE: MSMg01no263_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAGACACTGCCGCTGGGTCTCCCTTTTGTTGCTGTTTTTTGTTA
AAGATTTACTTATTATACATAAGTACACCGTAGCTGTCTTCAGACACACC
AGAAGAGGGCATCAGATCTCATTACAGATGGTTGCGAGCCACTATGTGGT
TGCTAGGAATTAAACTCAGAACCTCTGGAAGAGCAGCCGGCGCTCTTAAC
CACTGAGCTATCCCTCTAGCCTTATTTACTTAATTATTTATTGATCTGTC
TATCTATTTATTTTTAATATGAATTGGTGTTTTGCCTACATATATGTCTG
TGGGAGGGTGATAGATTCCCTGGAACAGGTCCCAGCACCTATGTCAGGCG
GTTCACAATGCCCTGCACGTCCAGCCTCAGGGGACCCCACACCATCGTGT
TGGTGGGAACCTAGGTACATGCAGCATACACTCAAAACACACACACACAC
ACACACACACACACACACACACACACGTTTTAAAAAATTGGAAAGGTTAA
AAACACAGTGAGTAGTTTGAGAATTGTCTCAGTAGTTAAAAGCACTAACT
AATTTCCAAAGGATAGAGATTCAGTTCCCAGCACCCACTTGGCAGCTCAC
AGATGCCTGCAATTCCAGTTCCAGGGCCTCTTACACCCTCTTCTGACTTC
CCAAACACCAGGCATGCACTTGATGCACAGA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGACTTGAGGCCTCCCAGGCCCCGAGA
GCCTTTAGGGGAGGAATCGGCTTCGGGCCCAGAGCTATGGCTGCAGAGGG
AAAAGGAAGAGGAGGGGTGTCTTCATCTGGAGCGGCCCAGAGTGCCACTT
TCCCTGGCCTCCGTCCTCTCCAACTAGAGACAATTCTCTCGGCTCACTTG
TCTGAGCGAGGACTAGAGATCTCTGCCTGGAAACTCCCAACCCCATAGGC
TTTCCTCCCCACCACAGGCTGCTCTGTTAGAACTGGCCTTACCTCACTTT
GCGATAGTCATTATTTTTCTTGCTGCACCCACCTTGGTTGGCACAGCCGG
GGTCCTGCAGTGAGGGGAGGCGGAGGAGAAAAAAAAAAATCTGTCGGGGG
CTTGCGTGTTTCTTTTCTCCCCTTCCGTCTTCGTCTCTATCTGTTGCTTC
CTCCTTTCCTTTCAGTCTCTTCCCCCTAACCTTTCCTTTCTCCTTGCCCT
TCTGCTCTCCTCTCTTCGTGCACCTTTACCTTTTTACTAACCTTGATCTA
TTCTCCTTTGATACTTTTTTTTTTCATATCATAGATTCAGTACATTACTT
CTCTTTTTTTTTTTTTTTCTTTCCCTCTATTTTATCGTCTGCCATTGCTG
CTTCTCTTGCCTTGTTTATATCACATTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_l20.g1 MSMg01no263_l20.g1 CHROMAT_FILE:
MSMg01no263_l20.g1 PHD_FILE: MSMg01no263_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:44 2005
         (291 letters)



>mm_chr11_97325950_97326640
          Length = 691

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacttgaggcctcccaggccccgagagcctttaggggaggaatcggcttcgggcccaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 490 agacttgaggcctcccaggccccgagagcctttaggggaggaatcggctttgggcccaga 431

                                                                       
Query: 61  gctatggctgcagagggaaaaggaagaggaggggtgtcttcatctggagcggcccagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gctatggctgcagagggaaaaggaagaggaggggtgtcttcatctggagcggcccagagt 371

                                                                       
Query: 121 gccactttccctggcctccgtcctctccaactagagacaattctctcggctcacttgtct 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gccgctttccctggcctccgtcctctccaactagagacaattctctcggctcacttgtct 311

                                                                       
Query: 181 gagcgaggactagagatctctgcctggaaactcccaaccccataggctttcctccccacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gagcgaggactagagatctctgcctggaaactcccaaccccataggctttcctccccacc 251

                                                             
Query: 241 acaggctgctctgttagaactggccttacctcactttgcgatagtcatta 290
           |||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 250 acaggctgctctgggagaactggccttacctcactttgcgatagtcatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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