BAC Information

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BAC

Clone NameMSMg01-263N17
Chromosome11 (Build37)
Map Location 105,363,934 - 105,364,214
singlet/doubletsinglet
Overlap genenone
Upstream geneCdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190
Downstream geneEG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263N17.T7 (MSMg01no263_n17.b1)MSMg01-263N17.TJ (MSMg01no263_n17.g1)
ACCAG405564AG405565
length754738
length of high quality
(start - end)
330 (47 - 376)281 (82 - 362)
definitionCHROMAT_FILE: MSMg01no263_n17.b1 PHD_FILE: MSMg01no263_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:53 2005CHROMAT_FILE: MSMg01no263_n17.g1 PHD_FILE: MSMg01no263_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC
TCTGCCCCCCCGAGTGCTGGGATTCCAGGTGTGTGCCACCACGCACAGCT
ATAATGTTGATTCTTTATCTTATTTTTTAATTAGTCATCATTACGCTTGT
GCATATCCTATGAGTGTGTGGCATGCACATGTCAGAATGCGCCCATGTGC
GCATGCGCACAAGTAGAGAGTCAGTTCTCTCCTTTAACCGTGGGATCTGT
GGCTCGAACTCAGATCAGTGTATCAAAGGCCTTTTACCCTCTGTGCCACC
TTGCCAGCACCTGTTTATTTTATGCACCCCACCCTCCATGACTGTGTGTG
TACATGGGTAAATTCTTACCCCCCCGAGCCCATGCACATGTGTATATGTG
TTCATGTTGGAGCCAAAGGTCAGCCTCCTTATTTTGAGACAGGGTCTCTC
ATTGGACTGGGTCTCTCCAGTAGGTTAGGTTGGCTGAGCAGGATCCGCCT
GCCTTCTGCTCCTCACCGCTGAGGATAAAAGCACAGGCTGCCACACCTGC
TTTTTCCATGGTTGCCGTACATCCGAACTCCGGTTCACGCGCTTGCTTAA
CAAGCCCTTTACCCACTGAAACATCTCCTCTACCCGATTGTTCTCGCTCT
TTCGTTTTCTACCTCCCCCCCCCTTTACCCCCCCCTTTTCCCTCTCTTTT
TCTC
NCCCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTCTTTTGCACAACAG
ACGTCATTTAACAGTCTTAATAAGGTGCTTAAATGCAGTCCAAGGGCCTT
GTCTAAAAGATCCTGAAATGTCCCCCTCTAAAGCAGAAAGTGGGAAGTCC
ATCCATCCTTTCCAGACATCCTGATGCTTCCTAGCATGTGCCCTGTGTTC
TGACCAGCCATTTCATATCCCGACTCAACACTCACCTCTGTACCACTGGG
CAGGCCTACTACATCAGAAATAAGGATGTAGGAGCCTGGGATGCCTTTGG
ATGCAAGAACAGATATCTACTTAGATAAATCACATAAGCGTGAGGTGGTT
CATGAGAACCCCGTGAACCCCAACGAGAAGTTGTTTGTGGTCTTGTTTCA
GAAGAGAGGGAAAAGCAGGCACAGCTGTTGCTTTGGGGAAGTGATGGGGT
AGAGAACAGACTGAGGTAAATGCACTACATGGCAGCTTACTACTGTTCTG
TAATCTAGCTCCACGTGACTGGACCTACCCTCACAGATATACTTGCTGTA
TAAACTCCAATGCCCATAAAGTAAAAAATTTTTAAATCCTTTTCTCCAAA
TAGTGAAAATTGAATGTGTTATCGGAGATTAATTACATACTTATAATTAC
TTGTTTTTATTATTTATACATTCTACGCTTCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_n17.g1 MSMg01no263_n17.g1 CHROMAT_FILE:
MSMg01no263_n17.g1 PHD_FILE: MSMg01no263_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:53 2005
         (281 letters)



>mm_chr11_105363734_105364414
          Length = 681

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctcttttgcacaacagacgtcatttaacagtcttaataaggtgcttaaatgcagtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tccctcttttgcacaacagacgtcatttaacagtcttaataaggtgcttaaatgcagtcc 422

                                                                       
Query: 61  aagggccttgtctaaaagatcctgaaatgtccccctctaaagcagaaagtgggaagtcca 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 421 aagggccttgtctaaaagatcctgaaatgtcccactctaaagcagaaagtgggaagtcca 362

                                                                       
Query: 121 tccatcctttccagacatcctgatgcttcctagcatgtgccctgtgttctgaccagccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tccatcctttccagacatcctgatgcttcctagcatgtgccctgtgttctgaccagccat 302

                                                                       
Query: 181 ttcatatcccgactcaacactcacctctgtaccactgggcaggcctactacatcagaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcatatcccgactcaacactcacctctgtaccactgggcaggcctactacatcagaaat 242

                                                    
Query: 241 aaggatgtaggagcctgggatgcctttggatgcaagaacag 281
           ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 241 aaggatgcaggagcctgggatgcctttggatgcaagaacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)