CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGAGTGGTTGTATCTCACGACTTAGTTCATCCAAGACAAAAATC
TGCGCCATGTAACATGGGGTTACACTCACTGTTCCTCCTCAGGAGCATGT
GCCTGCACACTGTACACGTACAGACATCCAGACTTCTCTTCAAGCCTTAT
GAAGCTCCAGAGTAAACATGTGAAGTAAGATGGACCATTGTGACCAGTAG
CAAAAAGTTTTCAAGATTATACAATCTTGCACTAGATAATTGAAAAATAG
TCCTTTGGGCTGTTAGATATCTAACAGATAGTAGGATAAATTCTCATATC
TTGCTCATTAAAGAAAAATAGACATTTTCCCTCTCTATGAAAGAAAGTGA
AAGAACTAGACCATTATCACCTACCATGGCAACTGAAATTCACTACATGC
TTAGTTCATCCTGTCACTATTGAAGACATGAGTGAGGAAAAAGTAAAACT
AAGCTTTTCGGGGTTTTTTGTTTTTGTCAAATATTTAAAAGTGACAGTTC
ATGGCATGACCCTAAAACACCTTTATAAGAGTGAAAGGAAGACAGGATAA
CATTGAGAGATGGAAGATAAAGGGACACGGACTTTTGGCCTAAAAACCTT
TTTCAAAAAAAAAATATATTTTCAAAAAAAACAACTTTTGGGGGTTTTAA
AAATTCTGNTTTCTCTTTTTACACATTTTTTTATTTCTTTTTTATTTATC
TTTTCTTTCTTTTCTCTTTATTCACTGCCATTATTA

CGATGACAGTGGGTAGGCCTGGGNNCGGCCGCCTGGTGTCCGTCGTNAAA
CNNNNTTTTTTTTTTTNTTTTTTTTTTNNTAAAAAAATATTTTTATTTTT
TAANNAAAATTATTTTGGGGGGGGTGGGAATATTAATAAATAAAACCTTT
ATTAAAAATATAACACCCCCCCCTTTGTTTTTTTTTCAAAAAAAAATATT
ATTTTTTTTTTTTACTAAAAAATAAAGAGCTTGTCTTTTTTTTCTTTNTN
TATAGTGTATCCCGGCGGGTTAATCCGTTTCNTNTGGNTNAGGNATTNNT
AAAAGGAACCCCCCAAGGAAAGGGGTAAGNAAACCTTGGGAAAGGAAATT
TTTTTAAACCCACCAAGGGGTTGGGGATAAGGGTTAAACCCCCAACTTCC
CAATTTTTTAAAGAGGGAATTTTAGGGGCCCTAAAAATTTACCCCCCCAA
AATTATAATTAACCTTTGGCCTTAATTAAGGAAATTAAAGGGACCAGGGC
CAGGTTGCGCAAAATTGGCCCTTGGGGGAAAGAACCCTGTTTGGGCCCCC
TTTTTGTGAACACAGAAAAAGGTGTTAAACCCCCCTTTTGGGTGTAAAAG
GGTCCCCAGGGTTTAACCCCGGGAAAATGGTGTTTTTTGTGGGGGGGCCC
TCCCCCCAAATAAACACATTTATTTTTGTGGAGACCCCCCCTCCCTCTTT
TGGGTGAGAAAAAAAAACCTTTATATAAACCCTCTATATACCACCTTTTT
CCTGGGTGGTAAAAAATAAAAAACCCCACAAAGGTGTGTTAGTAAAAAAC
AACACCCCTTTTTTTCTCTCCCCACCCCCACCTCCTTTTTTTTTCTTCCC
CTCCCACCTTTTTTTTGATAAGAAGAAGAGGGTGGTAATAATATATTTTC
TCCCCCCCCCCGCGGCGGGCTTTTTTATCTTTTCCCTCACAAAAA

Query= MSMg01no265_j08.b1 MSMg01no265_j08.b1 CHROMAT_FILE:
MSMg01no265_j08.b1 PHD_FILE: MSMg01no265_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:07 2005
         (549 letters)



>mm_chr11_42909576_42910522
          Length = 947

 Score =  959 bits (496), Expect = 0.0
 Identities = 533/548 (97%), Gaps = 8/548 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagagtggttgtatctcacgacttagttcatccaagacaaaaatctgcgccatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagagtggttgtatctcacgacttagttcatccaagacaaaaatctgcgccatg 264

                                                                       
Query: 65  taacatggggttacactcactgttcctcctcaggagcatgtgcctgcacactgtacacgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 taacatggggttacactcactgttcctcctcaggagcatgtgcctgcacacagtacacgt 324

                                                                       
Query: 125 acagacatccagacttctcttcaagccttatgaagctccagagtaaacatgtgaagtaag 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 acagacatccagacttctcttcaagccttatgaagctccagagtgaacatgtgaagtaag 384

                                                                       
Query: 185 atggaccattgtgaccagtagcaaaaagttttcaagatt--ataca-atcttgcactaga 241
           |||||||||||||||||||||||||||||||||||||||  ||| | |    ||||||||
Sbjct: 385 atggaccattgtgaccagtagcaaaaagttttcaagattgtata-aga----gcactaga 439

                                                                       
Query: 242 taattgaaaaatagtcctttgggctgttagatatctaacagatagtaggataaattctca 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taattgaaaaatagtcctttgggctgttagatatctaacagatagtaggataaattctca 499

                                                                       
Query: 302 tatcttgctcattaaagaaaaatagacattttccctctctatgaaagaaagtgaaagaac 361
           |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 500 tatcttgctcattaaagaaaaagagacatttttcctctctatgaaagaaagtgaaagaac 559

                                                                       
Query: 362 tagaccattatcacctaccatggcaactgaaattcactacatgcttagttcatcctgtca 421
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tagaccattatcagttaccatggcaactgaaattcactacatgcttagttcatcctgtca 619

                                                                       
Query: 422 ctattgaagacatgagtgaggaaaaagtaaaactaagcttttcggggttttttgtttttg 481
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctattgaagacatgagggaggaaaaagtaaaactaagcttttcggggttttttgtttttg 679

                                                                       
Query: 482 tcaaatatttaaaagtgacagttcatggcatgaccctaaaacacctttataagagtgaaa 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcaaatatttaaaagtgacagttcatggcatgaccctaaaacacctttataagagtgaaa 739

                   
Query: 542 ggaagaca 549
           ||||||||
Sbjct: 740 ggaagaca 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 947
Length adjustment: 10
Effective length of query: 539
Effective length of database: 937
Effective search space:   505043
Effective search space used:   505043
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)