BAC Information

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BAC

Clone NameMSMg01-265P21
Chromosome11 (Build37)
Map Location 84,120,315 - 84,120,628
singlet/doubletsinglet
Overlap geneAcaca
Upstream geneAp2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997
Downstream geneLOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265P21.T7 (MSMg01no265_p21.b1)MSMg01-265P21.TJ (MSMg01no265_p21.g1)
ACCAG407100AG407101
length736745
length of high quality
(start - end)
316 (36 - 351)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no265_p21.b1 PHD_FILE: MSMg01no265_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:39 2005CHROMAT_FILE: MSMg01no265_p21.g1 PHD_FILE: MSMg01no265_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTCT
GTGTTAAAGAAAAAGGCAAAGTGTGTTAGACCTTCATGGAATGGCTCTTT
GGGGACACAACATACAGTATGGCCTCAGTCAAGTGTCTAGAAGGCACTTT
CCCAGATAGCATGTCTCTTGTCTGAGCTTACTCCAGGGAAGAAGGTCCCT
CTGGGCAATGCACGCTTTGACCCCACTTAGAATCACCTCACGATCAACCT
ACCTTTAGTACTAACCAATCATCTCCCAAGAAAACGTTTTCACTTTATTT
CTCAAGTGGGGAAAAATAAAAAAGAGTTCCTGCATGTTACTTTTGGCCCA
ATCTTGTANATTTCCCCCCCCACCCTTACACTACAACCACTGCAATGGGA
CTTACTAGCCCTATTTCCCAAGATTCTCCTTAAGAAAACTCTTCAAATGT
AAACTAGCCAAGTAAAATTTGAACCCCCCCCCCATGCCCATTCATTCTGA
AGCCAATCATTCTAGGGATTTAAATAATAACATTCCAAGACAAAGGAAGT
AGTCAGTGCTACTTTGGTCACTGCTGCTCCATCTAGGAAAAGAGAGGTTG
GGACCAGTGAACTTGAAATCATTAGGTCTTCCTGCACAGCATTACACAAG
ATAGCAACCTATTTACTAGAACCCTATTAATTAACAAAGATGAATTCAAT
TAGCGGAGTTGATTAGTTTCTGAATCAACTTATTAC
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCACGTCCCGCTGCCTTG
AGCTCTTGATCCTCCTGCCTCCATCTCCCAAGTGCTGGGAATATGGTGTG
TGCTACCACACCTGTGGGGAGTGGATAAAGTCCTGAGTGAATCTTATACC
TCTTCTGGCCTCCACAGGCACCAGGAATGAACATGGTGTACATACATATA
TTCAGGCAAAACACCCATGCTCATAAGCTTAGAACATGCTAATCTTGCCC
CAAGTCGACAAGTGCATTCATATGTTTGAATACCGAGATAAGAAAAGTCT
GTCACTAGGTTTGGTGATGTCCCCGCCCGTCACTATTCTGGGCTTGAAGA
ATATTCTATTTTTTTTACCGGTCATTTTAATATTAAGTATTTTCTTCATT
TACATTTCCAATGCTATCCCAAAAGTCCCCCCATACCCTTCCCCCTCTGC
TCCCCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATAT
AGTGTTTGCTAGACTGATGGGCCTCTCTTTCCAATGATGGCCGACTAGGC
CATCTTCTGATACATATGCAGCTAGAGACACCATCTGAGGGTGGTGCTGT
TTTGTTTAATTTATTTTATTTCTTTTTTTTTTTTTTTTCTCGTCGCCTAT
TATCCCTATTTCTGCTTGACCTTTAATTACTATTTTCCCTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_p21.b1 MSMg01no265_p21.b1 CHROMAT_FILE:
MSMg01no265_p21.b1 PHD_FILE: MSMg01no265_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:39 2005
         (316 letters)



>mm_chr11_84120112_84120828
          Length = 717

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%), Gaps = 1/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctctgtgttaaagaaaaaggcaaagtgtgttagaccttcatggaatggctct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggaattctctctgtgttaaagaaaaaggcaaagtgtgttagaccttcatggaatggctct 458

                                                                       
Query: 64  ttggggacacaacatacagtatggcctcagtcaagtgtctagaaggcactttcccagata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttggggacacaacatacagtatggcctcagtcaagtgtctagaaggcactttcccagata 398

                                                                       
Query: 124 gcatgtctcttgtctgagcttactccagggaagaaggtccctctgggcaatgcacgcttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 397 gcatgtctcttgtctgagcttactccagggaagaaggtccctctgggcaatgcgcgcttt 338

                                                                       
Query: 184 gaccccacttagaatcacctcacgatcaacctacctttagtactaaccaatcatctccca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gaccccacttagaatcacctcacgatcaacctacctttagtactaaccaatcatctccca 278

                                                                       
Query: 244 agaaaacgttttcactttatttctcaagtggggaaaaataaaaaa-gagttcctgcatgt 302
           |||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 277 agaaaaagttttcactttatttctcaagtggggaaaaaaaaaaaaagagttcctgcatgt 218

                         
Query: 303 tacttttggcccaa 316
           ||||||||||||||
Sbjct: 217 tacttttggcccaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 717
Length adjustment: 9
Effective length of query: 307
Effective length of database: 708
Effective search space:   217356
Effective search space used:   217356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)