BAC Information

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BAC

Clone NameMSMg01-266F07
Chromosome11 (Build37)
Map Location 105,940,451 - 105,940,728
singlet/doubletsinglet
Overlap genenone
Upstream gene4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44
Downstream geneMap3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266F07.T7 (MSMg01no266_f07.b1)MSMg01-266F07.TJ (MSMg01no266_f07.g1)
ACCAG407350AG407351
length705736
length of high quality
(start - end)
237 (51 - 287)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no266_f07.b1 PHD_FILE: MSMg01no266_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:05 2005CHROMAT_FILE: MSMg01no266_f07.g1 PHD_FILE: MSMg01no266_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCACATTTTCCGACCGGCGCGGAANNCNGCATTTTTCANCACCCAGAGA
AAAGACAGCCTATATTTTTTCCAACTCCAACTTTCTTCTTTTTCCTTGTT
TTTTTGTTTGTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGG
AACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCT
CTGCCTGCCAAGTGCTGGGATTATTTTTGTACGCCACCACACCCGGCTTG
AACTCCTACTTTCAAAACAGACACCAATTTACTTTCCATTTACATCGTTT
ACTTNAACAACATGCAGCAGAACAAAGAATTTTTTTTTTTCTAAAGCCCT
NCCACGACAAATTTTTAAAAAGAAATTATTTTACAAACATCATTAATGAA
AAAAAAAAAGTTGTTCATCCAGGTCCAAGCATTTAAAAACATTATCAGTA
TTTCCTTTAGAGATAGGCTTGTCTTGAGAAGGAATTCTAATTCTTTTTTT
TTTTAAAGCATGTAATTAGGGCTAGAGAAATGGCTCTTGCCGAGGACCCC
TCTTCAGCTTCTAGGATTTACCCTCAGTGGCTTTTAACTCCAGAGATAGT
TGATCTCTTCTGCCCTCTGGAATCTGCTTTTTTTTTTTTTTATAGCCCCT
ATCACAATACCCTCTTCTCTTATTAATATCCCATTCTTCCTTACCCCCTG
TACCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATGGACTCCTCTGTAGATGATC
TCGGGGGAAAAAAAAAAAAAGAGCCAGTGGGCCCGGCAGACATGAATCAT
GAATGCTGTGGTAAATACCAAACTAGTTTGACTTCAGTCTTTCCAGCCAC
TGAATAAATAGGTAGCACTTTTAACTTTATTCCTTCTCATACCTTCTGCT
TATGATAAAAAACATTATTTTTATTTATTTTAAAATCTTAGTTTACTTTA
TGTGTGTGTGGAGGGGGGTGCCCAAGGAAACCAGAAGAGTATATCGTGCT
CCCTTGGAGAAATATTTGTATTTACCCCCCCCCCATGCCCAGTGTGGATT
CAGGGAACCGAACTCTGGCCCTCTACAAAAACAAAAAGAACTCTCACCTG
AGAACACCTGTCCCCCTACTTATTTTAAGTTAGTAACTGGGAATGGTGGT
CTGTGTCTACAGTCTGACCACTGGGAAGACTGAACAGGAGCATCCCCTGG
ACTTGAAGCCAGTGGGGCCTAGGATACAAATTCTGGCTCTGCCAGTCTTG
AACAAGAATTTAACCTCTTTAGTACTTGACTCTTCCGGAGTGAAGGCGTT
GCTAGTACCCAACTTGTGGGTTCCTACACTGCTGTTTAGCAATAGGAAGT
GTTGGGCGCAGGACAGATGGCTCAGTGGGGACAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_f07.g1 MSMg01no266_f07.g1 CHROMAT_FILE:
MSMg01no266_f07.g1 PHD_FILE: MSMg01no266_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:05 2005
         (289 letters)



>mm_chr11_105940251_105940931
          Length = 681

 Score =  499 bits (258), Expect = e-146
 Identities = 276/286 (96%), Gaps = 8/286 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatggactcctctgtagatgatctcgggggaaaaaaaaaaaaagagccagtgggcccgg 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatggactcctctgtagatgatct-gggggaaaaaaaaaaaaagagccagtgggcccgg 259

                                                                       
Query: 61  cagacatgaatcatgaatgctgtggtaaataccaaactagtttgacttcagtctttccag 120
           |||||||||||       ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cagacatgaat-------gctgtggtaaataccaaactagtttgacttcagtctttccag 312

                                                                       
Query: 121 ccactgaataaataggtagcacttttaactttattccttctcataccttctgcttatgat 180
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 313 ccactgaataaataggtagcacttttaactttattccttctcgtaacttctgcttatgat 372

                                                                       
Query: 181 aaaaaacattatttttatttattttaaaatcttagtttactttatgtgtgtgtggagggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaaaaacattatttttatttattttaaaatcttagtttactttatgtgtgtgtggagggg 432

                                                         
Query: 241 ggtgcccaaggaaaccagaagagtatatcgtgctcccttggagaaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggtgcccaaggaaaccagaagagtatatcgtgctcccttggagaaa 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 681
Length adjustment: 9
Effective length of query: 280
Effective length of database: 672
Effective search space:   188160
Effective search space used:   188160
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)