BAC Information

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BAC

Clone NameMSMg01-267A14
Chromosome11 (Build37)
Map Location 13,041,573 - 13,041,895
singlet/doubletsinglet
Overlap genenone
Upstream geneCobl, LOC627244
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267A14.T7 (MSMg01no267_a14.b1)MSMg01-267A14.TJ (MSMg01no267_a14.g1)
ACCAG407867AG407868
length742730
length of high quality
(start - end)
354 (386 - 739)339 (384 - 722)
definitionCHROMAT_FILE: MSMg01no267_a14.b1 PHD_FILE: MSMg01no267_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:59 2005CHROMAT_FILE: MSMg01no267_a14.g1 PHD_FILE: MSMg01no267_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAACAGATGACTCTTGAGTGGACAAGAAGCACTTAAAGAAAAGT
TCCCTAGTCAGCAGGGAAATAAAACTCAAAATGACCCTGAAATTATACTT
TACATCAATCAGAATGGCAAAGATAAAAAACTCAGGCGACAGCACATGTT
GGTGAGGATGTGGAGAAGAGAAAACTCTATTGCTGGTAGGATGGCAAATT
TGTATAACCACTCTGGAAATCAAGCTGGAAGTTCCTTAGAAAACTGGAAA
TAGTTCTACCTGAAGACCCAGTTATTCCACTCCTGGGCATATATCCAAAA
ATGTTCCACCATACCTTTTTACATGTGCTCCAATATGTTCATACATCCTT
ATTCATAATAGCCAGAAGCTGGAAACAACCAAGATGCCCCACTACAGAAG
AATGGATACAGTAAACGTGGTTCATTTACACAATGGTAGACTGAATACAG
AAAATGTTGTTCATTTACACAGTGGGATACTATTCAGGCATTAAAACAAA
GACATCATGATTTTTGCAGGCAAATGGATGGAACTATAAAATAATCATCC
TTAGTGAGGCAACCCAGACCCAAAAGGATATGCATGGTATGTACTCACTG
ATAAGGGGATATTGACATAAAAGTATAGAATACCCATGATACAACTCACA
GACTGCATGAAGTTTAGTAAGAAGGAAGGCCAAAGTAAGGAN
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAGCATCCATGTAATTATTTTCT
CTGAAAAGCCATTCAAGGGTTCATGCTGAAAACTGACTTGACATCTTCTT
CCCTTAGTAGCAGGCATCCTGTATGTGGAATATCTGTAGACCTACTTGTC
TGTTATCCAGGTTTTCACAGTGATGTTACTATTTAAGGTTGTGACAGCTG
ATAGAATATGTCAAATCACAAAAATCTGGTGTATGGCAAGGACAAAATTC
AGCTACATTAGTTCTGGCTGCCGAGCTACATGTGCTATTTACATATATGG
CTATTCTGACAATGATGCAGGAAGTCCATTACAATAATGAATTTTTAAAT
CACACAGGAATTTTATAACTTTATTTTGACTATATCACTAACCTACACAT
TCATATATTATTGCCTTTGAAGTAATTAATGTACTTGAAGCCATGTTAGA
AATGTATTAATAACTTCAAGTCATCTGAATAATTCATCAACTTCTCTCTT
TCTCTAAGTGTATATATATATATATATATATATATATATATTCCAATGAC
TTAGTGAAGTTGGAACTTTAAAATCAATGTTTAAATGGTATAAGATTATG
CCTAAAATATTATCAAAATTCATTGATAGCTCTTTTCCCCCAAGCTACTT
TTGTTCTCATTGGAAAAGAAATGTTTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_a14.g1 MSMg01no267_a14.g1 CHROMAT_FILE:
MSMg01no267_a14.g1 PHD_FILE: MSMg01no267_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:59 2005
         (339 letters)



>mm_chr11_13041165_13041903
          Length = 739

 Score =  563 bits (291), Expect = e-165
 Identities = 320/341 (93%), Gaps = 20/341 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataatgaatttttaaatcacacaggaattttataactttattttgactatatcactaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ataatgaatttttaaatcacacaggaattttataactttattttgactatatcactaacc 672

                                                                       
Query: 61  tacacattcatatattattgcctttgaagtaattaatgtacttgaagccatgttagaaat 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tacccattcatatattattgcctttgaagtaattaatgtacttgaagccatgttagaaat 612

                                                                       
Query: 121 gtattaataacttcaagtcatctgaataattcatcaacttctctct-t-tctctaagtgt 178
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 611 gtattaataacttcaagtcatctgaataattcatcaacttctctctctctctctaagtgt 552

                                                                       
Query: 179 atatatatatatatatatatatatatatattccaatgacttagtgaagttggaactttaa 238
           ||||||||||||                  ||||||||||||||||||||||||||||||
Sbjct: 551 atatatatatat------------------tccaatgacttagtgaagttggaactttaa 510

                                                                       
Query: 239 aatcaatgtttaaatggtataagattatgcctaaaatattatcaaaattcattgatagct 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aatcaatgtttaaatggtataagattatgcctaaaatattatcaaaattcattgatagct 450

                                                    
Query: 299 cttttcccccaagctacttttgttctcattggaaaagaaat 339
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cttttcccccaagctacttttgttctcattggaaaagaaat 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)