BAC Information

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BAC

Clone NameMSMg01-267K03
Chromosome11 (Build37)
Map Location 27,274,006 - 27,274,289
singlet/doubletsinglet
Overlap genenone
Upstream geneFancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneLOC100042377, EG626571
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267K03.T7 (MSMg01no267_k03.b1)MSMg01-267K03.TJ (MSMg01no267_k03.g1)
ACCAG408296AG408297
length738728
length of high quality
(start - end)
323 (46 - 368)245 (75 - 319)
definitionCHROMAT_FILE: MSMg01no267_k03.b1 PHD_FILE: MSMg01no267_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:45 2005CHROMAT_FILE: MSMg01no267_k03.g1 PHD_FILE: MSMg01no267_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGCAAAGACTTGCTTGTGTAAAAATGTATAACTTATGATAATGC
TGGTATGTAGTGCATGAATGTAGAGAGCCCCCCAGACTTCAGATCATTAA
ATGAAATAAATTTTCTGTGTGCTTGATACATTATTCAAAGAGTGTCTCCT
TAAAGTAATGCTACCCAGGAACCCAAGATAATCTTACTTTTAACCAAACC
AAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAAACAAAAC
AAAACAAAACAAAACAAAACACAGGTCTTTAATTAACAGAGTGAGCAGCC
ATTAGTCTGTACGCAAGTGTCCTTACACGCCACAGGGAGGACACATGCAA
AAAGGACGAACAGTGAAGATGGAGGGATGGATTGGAGTGATTTAGTCACA
CACCAAGAATTCAAGAGAGGACTTTTAATTAGTGCCATCTGGGGTATCAT
GACCTTCTGACCCCTTGATTTCTACTTCTATATTTTGAAACTCTGAGAGA
ATAAGATTTCATTGTTTAATTTAATATTTAATATTTCCATATTGTACCAT
CAGAAGATTAACACCCCAAGAATATGACTCATAATAGAACTTACAACACT
TTTCATAGACTATGTTTTTTTTAATGTGTGATTTCTACCTGAAAATCTAC
TGAAATCATTGCTAGAAAAAAAATAAAGCTAAAATAAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCTAAAAATTCCTGAAGTTTTTGAGACGATAATAA
TGTGAGAGCCCTGCGATCTGTGGCAGTTACTGCTGGTCTCTGATGCTGTG
TTTTCGATTGATGGATTGCTCATTGGGGATATCCTGAAAAGGAGGTTGAA
CTTGCCCCAAGAAACTAGACACCCCTAGGCAGAAAGAGGTATACATGCAT
CTAGGCCCTTTAACTTTCTTTCTCTCCTACCTAGTATTGGGTGGTTGAAA
AGGATTGGGGTATAAGGAGTTTTGGTTTGGTGGTAAATAATATAGAAGGC
AATAAAGTATCTTTTATAATGTACATCTACATGTCTCAAAAACTAAGGTA
AATGGGTGGAGAAATGGTTCAGAACTTAAACGACAACTTTGGTCTTCCAG
AGGACACATATTCTGTTCCAGGATCTATATCCTGTGGCTCATAAACACCT
GTAATTCAGCATCACGAGCTATTCCAACTTCTTCAAACTCTGAGGGCAGC
AGAACTCATGTATGCAACCCCAAACACAGATACTGTCCTAGTTAGTTCTA
TTGCTGTGATAAAACAATATGACCAAAAGCAAGATGGGGGAACAAAACGT
TTATTGACTTACATATCCAGAATCATAGTCCATTTGGGGGAAACCAAAGA
AGAAATATTAACCATTCAGGAACCTAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_k03.b1 MSMg01no267_k03.b1 CHROMAT_FILE:
MSMg01no267_k03.b1 PHD_FILE: MSMg01no267_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:45 2005
         (323 letters)



>mm_chr11_27273802_27274524
          Length = 723

 Score =  431 bits (223), Expect = e-125
 Identities = 279/319 (87%), Gaps = 35/319 (10%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgcaaagacttgcttgtgtaaaaatgtataacttatgataatgctggtatgta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgcaaagacttgcttgtgtaaaaatgtataacttatgataatgctggtatgta 264

                                                                       
Query: 65  gtgcatgaatgtagagagccccccagacttcagatcattaaatgaaataaattttctgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 gtgcatgaatgtagagagccccccagacttcagatcattaaatgaaagaaattttctgtg 324

                                                                       
Query: 125 tgcttgatacattattcaaagagtgtctccttaaagtaatgctacccaggaacccaagat 184
            |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 agcttgatacagtattcaaagagtgtctccttaaagtaatgatacccaggaacccaagat 384

                                                                       
Query: 185 aatcttacttttaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaac 244
           |||||||||||||||||||||||||||||    ||           ||||||||||||||
Sbjct: 385 aatcttacttttaaccaaaccaaaccaaa----ac-----------aaaccaaaccaaac 429

                                                                       
Query: 245 caaaacaaaacaaaacaaaacaaaacaaaacacaggtctttaattaacagagtgagcagc 304
           ||||||||||||                    ||||||||||||||||||||||||||||
Sbjct: 430 caaaacaaaaca--------------------caggtctttaattaacagagtgagcagc 469

                              
Query: 305 cattagtctgtacgcaagt 323
           |||||||||||| ||||||
Sbjct: 470 cattagtctgtaggcaagt 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)