Query= MSMg01no267_m01.b1 MSMg01no267_m01.b1 CHROMAT_FILE:
MSMg01no267_m01.b1 PHD_FILE: MSMg01no267_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:53 2005
(318 letters)
>mm_chr11_96465134_96465851
Length = 718
Score = 594 bits (307), Expect = e-174
Identities = 313/315 (99%)
Strand = Plus / Minus
Query: 4 ggaattccaaatatcttttcttaatctgctcttgagtttctcagtacctccttttgaagg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaattccaaatatcttttcttaatctgctcttgagtttctcagtacctccttttgaagg 459
Query: 64 gagatgcaaatgacctgcctactttgccatagttccttagcctctgagatgcaatttcct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gagatgcaaatgacctgcctactttgccatagttccttagcctctgagatgcaatttcct 399
Query: 124 ctcctgtgagagttcaaaaccaaatactccatggacaaaatcctcaaaacaggcagagga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctcctgtgagagttcaaaaccaaatactccatggacaaaatcctcaaaacaggcagagga 339
Query: 184 atcccatcaatgtttgggggaaagaagggaatgcataaacaaagagttaggaaggaaaac 243
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 338 atcccatcaatgtttgggggaaagaagggaatgtataaacaaagagttaggaaggaaaac 279
Query: 244 taacgacataaggctttctttacattgtagggaatatttgttttatgacctaaaatggag 303
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 278 taacgacataaggctttctttacgttgtagggaatatttgttttatgacctaaaatggag 219
Query: 304 tgcttctgagagtga 318
|||||||||||||||
Sbjct: 218 tgcttctgagagtga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no267_m01.g1 MSMg01no267_m01.g1 CHROMAT_FILE:
MSMg01no267_m01.g1 PHD_FILE: MSMg01no267_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:53 2005
(639 letters)
>mm_chr11_96305074_96306112
Length = 1039
Score = 688 bits (356), Expect = 0.0
Identities = 430/474 (90%), Gaps = 30/474 (6%)
Strand = Plus / Plus
Query: 13 attcattcattcattcagtcagtcagtcagtcagtcagtcagtcagtcagtcaagcaaca 72
||||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 213 attcattcattcattcattcattcattcattcagtcagtcagtcagtcagtcaagcaaca 272
Query: 73 ttcatcacgcctatatagtgcagtcttctacttcaaagaccaaactggcagcttctccgt 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttcatcacgcctatatagtgcagtcttctacttcaaagaccaaactggcagcttctccgt 332
Query: 133 ggtatcccagaaatcttacagacctttttaatgatgccccggccttcctcatgcccctgt 192
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggtatcccaggaatcttacagacctttttaatgatgccccggccttcctcatgcccctgt 392
Query: 193 ttaattcttttgtgattatggccacggcccatgctcaaaacatccagagcaggaaaatct 252
||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||||||||
Sbjct: 393 ttaattcttttgtgactatggccatggcctatgctcagaacatccagagcaggaaaatct 452
Query: 253 gagcatgtcacatagctgctcgtaagactccttagccaaatcacaaaataacgatgtgtt 312
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 453 gagcatgtcacatagctgctcgtaagactccttagccacatcacaaaataacgatgt--- 509
Query: 313 ttaaaggagaaccagcttttgtgatgttcatttcctatgcgtgtgcaaaatggaactcag 372
||||||||||||||||||||||||||||| |||
Sbjct: 510 ---------------------------tcatttcctatgcgtgtgcaaaatggaacgcag 542
Query: 373 ggtatgaagactcagactcctggggttctgtggatggaaatgactgagaagtcacctaag 432
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 543 ggtatgaagactcagactcctggggttctgtggatggaaatgactgagaagtcgcctaag 602
Query: 433 ccaggctttgctgtcgtagccttattagtataaagtcttagatttctgaggttc 486
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 603 ccgggctttgctgtcgtagccttattactataaagtcttagatttctgaggttc 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
