BAC Information

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BAC

Clone NameMSMg01-268L10
Chromosome11 (Build37)
Map Location 9,189,977 - 9,190,272
singlet/doubletsinglet
Overlap geneAbca13
Upstream geneLOC665380, Tns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469
Downstream geneLOC665435, LOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268L10.T7 (MSMg01no268_l10.b1)MSMg01-268L10.TJ (MSMg01no268_l10.g1)
ACCAG409047AG409048
length730739
length of high quality
(start - end)
296 (435 - 730)283 (75 - 357)
definitionCHROMAT_FILE: MSMg01no268_l10.b1 PHD_FILE: MSMg01no268_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:03 2005CHROMAT_FILE: MSMg01no268_l10.g1 PHD_FILE: MSMg01no268_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGCAGTTCTCAAAACATTTCAAGAAGTATTAATTCTAAAAAGTTC
AAAATATTTTTAGATCTTTTNTCCATCCAATGATTTTTAAGTCTTTGAAT
TTTTTCAGTGACCAGATGATCAAATTCCAGAAGCTCCTGAGGAGCAGCAT
CATGGGAGTCTGCCTTTAAACGCTTTAAATGAGTTAGCCATGAAACAGTT
GCATTGAAAACAAGCTCAGTGAGAGAAGACAGATTATCAAATTCAGGAGC
AGGGAATGAGCCAGAAGGATTAAATAGTAATTTCTCCACAAACTCCACAA
ACGACAGTATTTTGTTCTTCTGCCCCTCTTCAAGGATGTGCAACTTTTTG
TCCACCACTAAAAGGTGCTTTGTGAAACTGAAGGCCCTACGATACAGATA
GAATGGTTTTATTATCAGAAAGAAAAATTAACTCAATGCCTCAAATTTCT
AAGATCTTTACAGACATGTAATGATTTATAGTGGTCCAAACAAAAGATTT
TCTAGACAATACAGTTTTTACTTAATGTCAAACTAACATGAGCATCTATT
ACTATGTTAGAAATCCCAACATGACTGCAAATATTTAACTTANAATTTGT
TTCCTATTATGGGGAAGAATACATTCTAAATCCCATTCCCCTCTTGATCA
ATATTGATGACTGCTAAGCACAAGTCTGCC
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACATCTGCTGTGGTTGTCTGCCTAAG
ATCAATCCAGTCAGCATCCCTGTATGGAGTGGGAAGGGACTCCTGAGTTC
TCACCTCTAACTGAGGAGTTATATACTGGCTATGGCTTTTGGGGAGGGGG
GGGTCAGTTTTCTTTAAGTGTGTGGCTCTTGGTAGGTTGGGCATGCTACA
CTGAATGCCATTGTGGACAGGAGTATATGGGAGGCACAAATTGGGCTTGG
TTGGTTATTAAGACCCTAATTAGACAGGGTGTGAAATTAGGGGATAAGGA
GGTGGGGTTGAATTTGTTTCCCCCCCCCCCCCCCTTGATTTTTTTTTTTT
ATNTTATTGNTNGAGTGCCCCCAAAAAAAAAAAAAAAAATGGTGGGGGGG
GGGTCTTCTCTTTCTTTCCTTTCACCCATTTTTCTGTATATTATTTTTCT
CACCTTTTATCACACAATCTTATCCCCAGTTTTTCTTTTTTGTTTTCACC
CTCCATCCCATTTTTCTTCTTCCCATTCTTCTCTTCTCTTCCCTCTCGAC
TTCATCCCTTTCTCTTTTGTGCTTTACCGATATTTTTCGCATCTTGGTCT
GTTTGTTCCTCTTTTTTATACTTCTCCTATTCTCGCTCTCTTTCCCTCCC
TCCTTTTCCTTTTTTTCTTGATCTAACTCTTTTTTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_l10.b1 MSMg01no268_l10.b1 CHROMAT_FILE:
MSMg01no268_l10.b1 PHD_FILE: MSMg01no268_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:03 2005
         (296 letters)



>mm_chr11_9189777_9190472
          Length = 696

 Score =  520 bits (269), Expect = e-152
 Identities = 289/296 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctacgatacagatagaatggttttattatcagaaagaaaaattaactcaatgcctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ccctacgatacagatagaatggttttattatcagaaagaaaaattaactcaatgcctcaa 437

                                                                       
Query: 61  atttctaagatctttacagacatgtaatgatttatagtggtccaaacaaaagattttcta 120
           ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 attgctaagatcattacagacatgtaatgatttatagtggtccaaacaaaagattttcta 377

                                                                       
Query: 121 gacaatacagtttttacttaatgtcaaactaacatgagcatctattactatgttagaaat 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 376 gacaatacagtttttacttaatgtctaactaacatgagcatctattactttgttagaaat 317

                                                                       
Query: 181 cccaacatgactgcaaatatttaacttanaatttgtttcctattatggggaagaatacat 240
           |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 316 cccaacatgactgcaaatatttaacttaaaatttgattcctattatggggaagaatacat 257

                                                                   
Query: 241 tctaaatcccattcccctcttgatcaatattgatgactgctaagcacaagtctgcc 296
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 256 tctaaatcccattcccctcttgatcaatatttatgactgctaagcacaagtctgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)