MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-269A21
Chromosome	11 (Build37)
Map Location	23,683,422 - 23,683,942
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel
Downstream gene	Papolg, A830031A19Rik, LOC100042256, Bcl11a
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100042846 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042846
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins pseudo : _no_value

name	LOC666078 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666078
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins pseudo : _no_value

name	B3gnt2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53625 MGI:1889505
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9130230N09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77671 MGI:1924921
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs

name	Commd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17846 MGI:109474
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zrsr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22183 MGI:98885
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cct4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12464 MGI:104689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930430E16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73873 MGI:1921123
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042875 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042875
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Xpo1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:103573 MGI:2144013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100042202 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042202
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs

name	Ahsa2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:268390 MGI:1916133
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700093K21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67358 MGI:1914608
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A730027B03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319301 MGI:2441821
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 93 ESTs, 1 Protein

name	0610010F05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71675 MGI:1918925
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pex13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72129 MGI:1919379
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933435A13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74467 MGI:1921717
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Rel (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19696 MGI:97897
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Papolg (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216578 MGI:2442119
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A830031A19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:268391 MGI:2685508
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	LOC100042256 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042256
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Bcl11a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14025 MGI:106190
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	B3gnt2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328452 GeneID:53625 MGI:1889505
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 transcript_id : NM_016888.4

name	9130230N09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261681 GeneID:77671 MGI:1924921
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs product : RIKEN cDNA 9130230N09 gene transcript_id : XM_986326.2

name	Commd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84452160 GeneID:17846 MGI:109474
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : COMM domain containing 1 transcript_id : NM_144514.2

name	Zrsr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118442835 GeneID:22183 MGI:98885
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1 transcript_id : NM_011663.2

name	Cct4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753321 GeneID:12464 MGI:104689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chaperonin subunit 4 (delta) transcript_id : NM_009837.1

name	4930430E16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39930452 GeneID:73873 MGI:1921123
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930430E16 gene transcript_id : NM_028672.1

name	LOC100042875 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261682 GeneID:100042875
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100042875 transcript_id : XM_001479561.1

name	Xpo1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78190505 GeneID:103573 MGI:2144013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : exportin 1, CRM1 homolog (yeast) transcript_id : NM_134014.3

name	Xpo1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78190506 GeneID:103573 MGI:2144013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : exportin 1, CRM1 homolog (yeast) transcript_id : NM_001035226.1

name	LOC100042202 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261637 GeneID:100042202
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs product : hypothetical protein LOC100042202 transcript_id : XM_001477716.1

name	Ahsa2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62530187 GeneID:268390 MGI:1916133
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : AHA1, activator of heat shock protein ATPase homolog 2 (yeast) transcript_id : NM_172391.3

name	1700093K21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254497 GeneID:67358 MGI:1914608
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700093K21 gene transcript_id : NM_026105.2

name	0610010F05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117956374 GeneID:71675 MGI:1918925
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 0610010F05 gene transcript_id : NM_027860.2

name	Pex13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802876 GeneID:72129 MGI:1919379
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peroxisomal biogenesis factor 13 transcript_id : NM_023651.3

name	4933435A13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75991712 GeneID:74467 MGI:1921717
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933435A13 gene transcript_id : NM_028956.4

name	4933435A13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75991713 GeneID:74467 MGI:1921717
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933435A13 gene transcript_id : NM_001033654.2

name	4933435A13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75905501 GeneID:74467 MGI:1921717
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933435A13 gene transcript_id : NM_028304.2

name	Rel (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112181203 GeneID:19696 MGI:97897
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reticuloendotheliosis oncogene transcript_id : NM_009044.2

name	Papolg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27369777 GeneID:216578 MGI:2442119
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : poly(A) polymerase gamma transcript_id : NM_172555.1

name	LOC100042256 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261643 GeneID:100042256
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100042256 transcript_id : XM_001477822.1

name	Bcl11a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131099 GeneID:14025 MGI:106190
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : B-cell CLL/lymphoma 11A (zinc finger protein) transcript_id : NM_016707.2

name	B3gnt2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542175 CCDS:CCDS24471.1 GeneID:53625 MGI:1889505
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] GO_function : GO:0030145 - manganese ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IMP]; GO:0006486 - protein amino acid glycosylation [Evidence IMP]; GO:0007608 - sensory perception of smell [Evidence IMP] codon_start : 1 note : beta-1,3-N-acetylglucosaminyltransferase; beta-1,3-N-acetylglucosaminyltransferase 1; UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 6 product : UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 protein_id : NP_058584.3

name	9130230N09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94389916 GeneID:77671 MGI:1924921
definition	codon_start : 1 product : hypothetical protein LOC77671 protein_id : XP_991420.1

name	Commd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84452161 CCDS:CCDS24472.1 GeneID:17846 MGI:109474
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0019871 - sodium channel inhibitor activity [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006878 - copper ion homeostasis [Evidence ISS] codon_start : 1 note : U2af1-rs1 region 1; copper metabolism domain containing 1 product : COMM domain containing 1 protein_id : NP_653097.2

name	Zrsr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755917 GeneID:22183 MGI:98885
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : U2 small nuclear ribonucleoprotein auxiliary factor (U2AF), 35 kDa, related sequence 1; U2 small nuclear ribonucleoprotein auxiliary factor (U2AF), related sequence 1 product : U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1, related sequence 1 protein_id : NP_035793.1

name	Cct4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753322 CCDS:CCDS24474.1 GeneID:12464 MGI:104689
definition	GO_component : GO:0005832 - chaperonin-containing T-complex [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA] GO_process : GO:0044267 - cellular protein metabolism [Evidence IEA]; GO:0006457 - protein folding [Evidence IEA] codon_start : 1 function : CCT is a molecular chaperone which assists the folding of proteins in eukaryotic cytosol note : TCP-1 delta; T complex protein 1, delta product : chaperonin subunit 4 (delta) protein_id : NP_033967.1

name	4930430E16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930453 GeneID:73873 MGI:1921123
definition	codon_start : 1 product : hypothetical protein LOC73873 protein_id : NP_082948.1

name	LOC100042875 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261683 GeneID:100042875
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479611.1

name	Xpo1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78190507 CCDS:CCDS24475.1 GeneID:103573 MGI:2144013
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005643 - nuclear pore [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008565 - protein transporter activity [Evidence IDA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0006611 - protein export from nucleus [Evidence IDA]; GO:0000059 - protein import into nucleus, docking [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : exportin 1, CRM1 homolog protein_id : NP_001030303.1

name	Xpo1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38604071 CCDS:CCDS24475.1 GeneID:103573 MGI:2144013
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005643 - nuclear pore [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008565 - protein transporter activity [Evidence IDA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0006611 - protein export from nucleus [Evidence IDA]; GO:0000059 - protein import into nucleus, docking [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : exportin 1, CRM1 homolog protein_id : NP_598775.2

name	LOC100042202 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261638 GeneID:100042202
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477766.1

name	Ahsa2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62530188 CCDS:CCDS24476.1 GeneID:268390 MGI:1916133
definition	GO_process : GO:0006457 - protein folding [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA] codon_start : 1 product : RIKEN cDNA 1110064P04 protein_id : NP_765979.3

name	1700093K21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254498 CCDS:CCDS24477.1 GeneID:67358 MGI:1914608
definition	codon_start : 1 product : hypothetical protein LOC67358 protein_id : NP_080381.2

name	0610010F05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117956375 GeneID:71675 MGI:1918925
definition	codon_start : 1 product : hypothetical protein LOC71675 protein_id : NP_082136.2

name	Pex13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543471 CCDS:CCDS24478.1 GeneID:72129 MGI:1919379
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005777 - peroxisome [Evidence IDA] GO_function : GO:0000268 - peroxisome targeting sequence binding [Evidence TAS] GO_process : GO:0016560 - protein import into peroxisome matrix, docking [Evidence IEA]; GO:0006625 - protein targeting to peroxisome [Evidence TAS] codon_start : 1 product : peroxisomal biogenesis factor 13 protein_id : NP_076140.2

name	4933435A13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75905504 CCDS:CCDS24479.1 GeneID:74467 MGI:1921717
definition	codon_start : 1 product : hypothetical protein LOC74467 protein_id : NP_001028826.1

name	4933435A13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:68342034 CCDS:CCDS24479.1 GeneID:74467 MGI:1921717
definition	codon_start : 1 product : hypothetical protein LOC74467 protein_id : NP_082580.1

name	4933435A13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312770 CCDS:CCDS24479.1 GeneID:74467 MGI:1921717
definition	codon_start : 1 product : hypothetical protein LOC74467 protein_id : NP_083232.1

name	Rel (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112181204 CCDS:CCDS24480.1 GeneID:19696 MGI:97897
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0050875 - cellular physiological process [Evidence IEA]; GO:0001816 - cytokine production [Evidence IMP]; GO:0045084 - positive regulation of interleukin-12 biosynthesis [Evidence IDA]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : reticuloendotheliosis oncogene protein_id : NP_033070.2

name	Papolg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369778 CCDS:CCDS24481.1 GeneID:216578 MGI:2442119
definition	GO_function : GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : SRP 3'-adenylating protein product : poly(A) polymerase gamma protein_id : NP_766143.1

name	LOC100042256 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261644 GeneID:100042256
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477872.1

name	Bcl11a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7710022 CCDS:CCDS24483.1 GeneID:14025 MGI:106190
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003714 - transcription corepressor activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030183 - B cell differentiation [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0030217 - T cell differentiation [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : COUP-TF interacting protein 1; ecotropic viral integration site 9; mouse myeloid leukemia product : B-cell CLL/lymphoma 11A (zinc finger protein) protein_id : NP_057916.1

name	LOC100042846 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261680 GeneID:100042846
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins product : similar to initiation factor 2 associated 67 kDa protein pseudo : _no_value transcript_id : XR_034248.1

name	LOC666078 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261632 GeneID:666078
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins product : similar to Rps16 protein pseudo : _no_value transcript_id : XR_033335.1

name	A730027B03Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149261641 GeneID:319301 MGI:2441821
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 93 ESTs, 1 Protein product : RIKEN cDNA A730027B03 gene transcript_id : XR_002349.2

name	A830031A19Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149261684 GeneID:268391 MGI:2685508
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA A830031A19 gene transcript_id : XR_035402.1

clone name	MSMg01-262O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427P20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-530D13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-296B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-216I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546P15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-378J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395P03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-234A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481B20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-426D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203J03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074B01
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-269A21.T7 (MSMg01no269_a21.b1)	MSMg01-269A21.TJ (MSMg01no269_a21.g1)
ACC	AG409290	AG409291
length	706	736
length of high quality (start - end)	225 (371 - 595)	584 (73 - 656)
definition	CHROMAT_FILE: MSMg01no269_a21.b1 PHD_FILE: MSMg01no269_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:26 2005	CHROMAT_FILE: MSMg01no269_a21.g1 PHD_FILE: MSMg01no269_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:26 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CATAATTTGCGGCGCTAAACGACTCACATTTTCCGAGCCGGGCGGAANCA GCAAAGTTACCCCAGGCGAGCCNNGGNGAGNGGAAGCCAGGNNGCNAAGC CCAGCAAAACTTCCACCNAGGCCACCANGGCCACNNNGNNCANGNGCCCA ACGAGCAAGGACAGGGAAGGCGGGCGAAAGAGGCCGACCGGCCACAGAAC AGGNCANCNAANCCACAAGAAAANNGAACNCCNCCNCAGCNGAAGCTTTC TTTTGGTGAGCATTTACATGGAACATCCTTTGCCCATTTGGACAGATCTA TTCACATACTTCTTTTTTTTTTGNCNNNCNCACCAANNNNCCAANCGNGA NCTTTCTATGTCCCCGACCATCCAGCCAATCAATTGGCTACAGCCCATGG GTCAGTGAATAGTCATACAACTGGACATTTCTTCTTCCAAAGAAACTGTA ATACCATGTGTGCTGCCTAAAGTTCTGCCCATTGTGAAGATTTTTCCTTC ACCTGTGTCTTTCAGGATTGTCCTGGAAAGGGGTTGTAATGCTGTGGCTG TCCACTTCTGGGTGGTGCCTGTATAACATGCAGAGCCATCAGTAAACTAG GTCCCAGTTCGCTTCTTCAGTCAGCCGATCATAGGGAACACCCCATGAGG TTATATTTTTTTGCTTGGCAGCAGATAGCATTGTAACAGGAGAAAAAATC ATACGG	GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXATATTTTAAAACAATTAAAGGACTGCTA AAGAAGCTGAATGGGCTCACAGGGTGACTCTTGAGCAATTTCAGGTGACA GCCTAGAACACAGAGAGGCACAACAGTAAACTAGCTTCTCTGTTAACCAA TCATCTTAGTTAAGATTCCCCAAATGTCTGTGAGGGGAATGAGGCCTGAG CCCTGGTCACAGACATTCATGATTAAGCCTAGTTCATTGCCACCATGACA TGAACTATCTGCATGTAAATATTATCTTTATGTCAATAGCCTTCATTGCC AATGTAAATTGTGCTGGAAGTCTTGCTTAGCCAGTGAGAGGCTTCAAACA GACTCTGGGGTGAGGGGCTCCTTTTTATTCCTATTCTACTTCAGCCATGC TGTGAGGAAACACAACCAACCCTTGTAGAAGGCCCATGTGGAGAGATTCA TGCACAGAGAAAAAGTCACTTAGCCATGGCAACCACTCTTCTAAGTGCTT GCTTTTCCCTGCATAGTCATGTCTGACTGCATGCAAATCCTTTTAAATTA GTAATTGATTCGGATGTAAAATGTCTCCACAAAGTTCATGTGCTTGAACC TTTGCNTCAAGGCTGGTGATGCTGTTTTAGGGACTGTAGAACCTTCAGGT GGTGAGGGCTATGTGGAAAAGGGTGGTCTCGGGAGG
quality values	Open. Hide. 8 8 8 8 8 19 30 39 32 22 12 12 12 17 17 19 10 9 10 25 25 43 28 19 19 8 8 6 7 7 7 6 6 6 6 6 9 9 9 9 10 9 15 12 27 21 3 0 3 17 19 21 19 9 9 9 6 6 6 6 6 6 11 6 8 8 6 6 8 9 20 3 0 0 3 3 0 3 27 3 0 3 27 19 25 23 23 19 7 7 3 0 0 3 3 0 3 23 23 21 11 11 9 21 16 7 7 6 6 8 11 21 21 9 9 9 3 0 3 9 21 23 37 37 23 23 3 0 3 21 21 21 21 3 0 0 0 3 0 0 3 3 0 3 0 3 27 27 19 19 8 6 6 17 19 23 19 9 9 9 9 22 44 32 24 9 9 9 9 19 9 9 9 6 8 10 21 25 47 59 59 23 21 9 9 9 19 8 6 6 7 7 22 24 37 37 37 37 37 37 27 27 3 0 3 3 0 3 0 3 3 0 3 17 14 9 9 9 9 9 7 7 3 0 0 3 27 27 3 0 3 3 0 3 3 0 3 27 27 3 0 3 20 9 7 7 7 8 7 10 10 27 29 59 59 59 59 59 59 59 59 59 59 59 59 59 59 48 48 48 48 48 57 57 59 59 59 59 59 68 68 68 57 57 57 57 57 57 59 57 57 57 57 57 57 59 57 57 57 53 53 50 50 50 50 47 59 59 27 27 9 9 9 17 16 19 19 14 14 10 9 9 3 0 3 0 0 0 3 0 3 27 27 27 27 3 0 0 0 0 3 27 27 3 0 3 3 0 3 3 0 3 15 23 9 9 9 9 9 10 10 10 21 12 10 10 10 12 18 18 28 25 28 25 36 43 47 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 57 59 48 48 59 48 48 48 48 48 54 59 59 57 44 44 30 30 21 19 13 13 13 32 32 57 59 59 68 68 68 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 59 59 57 59 57 59 59 59 59 68 68 68 68 68 68 68 68 68 57 57 57 54 54 59 59 59 68 68 57 57 54 48 48 57 48 54 57 57 59 43 57 57 59 57 68 68 57 53 53 48 48 48 48 48 57 57 57 57 48 57 57 57 57 48 43 43 43 40 41 41 41 39 39 39 37 37 39 39 39 39 37 37 43 44 44 47 46 59 47 48 48 48 48 57 48 48 48 48 48 48 23 23 13 13 16 24 32 34 43 37 37 34 29 26 10 12 9 9 9 14 18 31 37 39 37 37 41 41 41 36 47 28 22 10 10 10 13 21 30 37 30 15 11 9 10 10 15 19 19 17 21 22 28 22 18 19 22 23 34 30 12 10 9 9 12 8 18 18 16 15 20 21 37 37 36 32 37 28 21 8 8 8 8 8 8 11 11 26 21 28 32 21 16 14 14 14 10 13 8 8 8 7 7 7 9 9 21 19 29 24 19 15 11 11 15 22 14 15 19 14 20 15 13 12 11 12 12 14 15 24 18 11 12 8 8 8 10 8 8 8 8 9 10 11 10 14 19 8 8 6 6 8 8 9 9 9	Open. Hide. 8 8 8 8 10 17 13 26 25 25 36 37 37 50 50 50 50 50 50 57 57 57 57 57 57 53 53 53 53 53 57 57 50 48 42 36 36 36 40 42 54 68 68 68 50 51 50 50 50 50 51 68 68 68 68 68 57 48 50 41 41 46 50 57 68 68 50 50 50 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 68 68 68 68 68 59 68 68 68 68 68 68 68 68 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 59 59 59 59 59 59 59 59 43 29 30 18 14 14 14 15 18 24 28 30 24 31 28 18 18 11 11 11 18 18 17 19 30 34 43 48 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 54 54 59 59 59 68 68 59 59 59 59 54 54 54 54 54 48 48 57 57 59 59 57 68 68 68 68 68 68 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 50 50 50 59 50 47 47 47 44 44 37 32 31 37 37 37 59 59 47 47 48 59 59 59 47 47 47 47 47 47 59 59 59 48 48 59 59 59 59 59 59 59 59 53 53 50 50 50 50 47 47 39 39 39 37 37 39 39 37 37 39 39 44 47 47 50 59 59 59 59 50 57 57 57 48 43 46 46 46 43 59 48 48 48 57 57 57 57 57 57 59 48 48 48 47 43 47 47 57 59 59 48 48 48 59 59 48 43 39 39 39 41 59 43 41 37 37 43 44 44 47 47 37 37 37 31 31 31 39 39 36 39 39 41 41 37 37 41 41 37 31 37 37 37 37 37 30 30 30 34 34 29 34 28 28 28 34 34 30 30 30 31 31 41 41 32 32 41 32 32 20 20 20 24 22 27 30 27 32 32 32 34 34 19 8 3 0 3 6 6 11 20 16 28 24 26 18 15 15 13 13 18 25 25 28 24 25 21 21 14 14 13 27 19 23 23 18 18 13 13 11 15 15 16 11 11 15 15 13 11 11 11 11 11 11 18 14 18 15 19 13 19 19 9 8 8 10 10 10 12 11 10 10 8 8 8 11 11 10 16 12 11 9 10 9 11 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no269_a21.g1 MSMg01no269_a21.g1 CHROMAT_FILE:
MSMg01no269_a21.g1 PHD_FILE: MSMg01no269_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:26 2005
         (584 letters)



>mm_chr11_23683222_23684205
          Length = 984

 Score =  932 bits (482), Expect = 0.0
 Identities = 512/522 (98%), Gaps = 1/522 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattttaaaacaattaaaggactgctaaagaagctgaatgggctcacagggtgactctt 60
           ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 atattataaaacaattaaaggactgctaaagaagctgaatgggctcacggggtgactctt 260

                                                                       
Query: 61  gagcaatttcaggtgacagcctagaacacagagaggcacaacagtaaactagcttctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagcaatttcaggtgacagcctagaacacagagaggcacaacagtaaactagcttctctg 320

                                                                       
Query: 121 ttaaccaatcatcttagttaagattccccaaatgtctgtgaggggaatgaggcctgagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaccaatcatcttagttaagattccccaaatgtctgtgaggggaatgaggcctgagcc 380

                                                                       
Query: 181 ctggtcacagacattcatgattaagcctagttcattgccaccatgacatgaactatctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggtcacagacattcatgattaagcctagttcattgccaccatgacatgaactatctgc 440

                                                                       
Query: 241 atgtaaatattatctttatgtcaatagccttcattgccaatgtaaattgtgctggaagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtaaatattatctttatgtcaatagccttcattgccaatgtaaattgtgctggaagtc 500

                                                                       
Query: 301 ttgcttagccagtgagaggcttcaaacagactctggggtgaggggctcctttttattcct 360
           ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 501 ttgcttagccagtgagaggcttcaaccaaactctggggtgaggggctcctttttattcct 560

                                                                       
Query: 361 attctacttcagccatgctgtgaggaaacacaaccaacccttgtagaaggcccatgtgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 attctacttcagccatgctgtgaggaaacacaaccaacccttgtagaaggcccatatgga 620

                                                                       
Query: 421 gagattcatgcacagagaaaaagtcacttagccatggcaaccactcttctaagtgcttgc 480
           ||||||||||||| |||||| |||| |||||||||| |||||||||||||||||||||||
Sbjct: 621 gagattcatgcacggagaaagagtcgcttagccatgacaaccactcttctaagtgcttgc 680

                                                     
Query: 481 ttttccctgcatagtcatgtctgactgcatgcaaatcctttt 522
           ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 ttttccctgcatagtcatgtctgactgcatgcaaatc-tttt 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information