XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAAGGGAAGCATCATTGTTGACTTTTTTATTTACTCGTTGACTCTCCGAC
TTAGGATTACTAAAAGAAATTTAGAGGGAAGAAAAGATTTTAATTATACA
AAAACACAATTAAACATAAATATAACAGTTTCTTTTAAAGATTATGTAGT
CATTTGTGCTAGTGAGTGATACATAACAACAAATTACTACTGTCTTATAT
ATTCTGTGCTTCTAACTAATATTGATATATCCAATATGCCTTAATTGGTA
GAAATATATATCTGAAACCAAAATACCCTTAACTGATTTTCTGTTACTTT
TTATTCCTGGAAGAAATAGCCTCCTAATTCCATTCTCACAAAATAAATCC
ACTTAAACAAAGTTATTAACTCAAGTGGTTACTTATCCTCACTCAGTAAT
GTAGGTTCTACTTCTTTAGGAAACAACCCAGAAAACCTTTTTGAAAATGA
AGTAGGTAACAGAAATTGGGATCTTTATCTTGTGCAAATGTTTGAATTGA
CTAAAACAAAACAATACCTATTTTAAAGAAAAATTATAGTAGAAAACCAG
AGTTAAAAAGAGTTGAAAATGGGAAACTGAAAAGTGGGACTAGGGGTGGA
GAGATGGCTCGGTAGTTAGGAGCACTGGCTGTTCTTCCAGAGAACCAGGA
TTTGATTCCCAATACCCAGTGGTAGCTCACAACTATG

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATA
AAAGCAATCTACAGAAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAA
GCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGTCCACTCT
CGCCCTACCTATTCAACATTGCACTTGAAGTCCTAGCCAGAACAATTAGA
CAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGCAAGAAGTCAAAAT
ATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATT
CCACCAGAGAACACCTAAGCCCGATAAACAGCTTCAATGAAGTAGCTGGA
TATAAAATTAACTCAAACAAGTCAATGGCCTTTCTGTACACAAAGGATAA
ACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAA
ATAATATNAAAATACCTTGGGTGTGACTCTAAACTAAGAAGTGAAAGAAT
CTGTATGATAAGAACTCCTTAGCCTCTGGAAAAAGAAATTAAAGAAAAAC
TTCCAAAAAGGGAAGAAATTCCCAGGGCCCATGGATTGGCGAGGAAACAC
ATTTGTGAAAAAGGGGTAATTTGGGCAAAAGGAACTTTCAAAATTTTAAG
GGGGCCCCCCCCCCAAAAATTTCCCCA

Query= MSMg01no270_c01.b1 MSMg01no270_c01.b1 CHROMAT_FILE:
MSMg01no270_c01.b1 PHD_FILE: MSMg01no270_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:43 2005
         (697 letters)



>mm_chr11_29299447_29300543
          Length = 1097

 Score = 1332 bits (689), Expect = 0.0
 Identities = 692/693 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaagggaagcatcattgttgacttttttatttactcgttgactctccgacttag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gaattctaagggaagcatcattgttgacttttttatttactcgttgactctccgacttag 743

                                                                       
Query: 65  gattactaaaagaaatttagagggaagaaaagattttaattatacaaaaacacaattaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gattactaaaagaaatttagagggaagaaaagattttaattatacaaaaacacaattaaa 683

                                                                       
Query: 125 cataaatataacagtttcttttaaagattatgtagtcatttgtgctagtgagtgatacat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cataaatataacagtttcttttaaagattatgtagtcatttgtgctagtgagtgatacat 623

                                                                       
Query: 185 aacaacaaattactactgtcttatatattctgtgcttctaactaatattgatatatccaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aacaacaaattactactgtcttatatattctgtgcttctaactaatattgatatatccaa 563

                                                                       
Query: 245 tatgccttaattggtagaaatatatatctgaaaccaaaatacccttaactgattttctgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tatgccttaattggtagaaatatatatctgaaaccaaaatacccttaactgattttctgt 503

                                                                       
Query: 305 tactttttattcctggaagaaatagcctcctaattccattctcacaaaataaatccactt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tactttttattcctggaagaaatagcctcctaattccattctcacaaaataaatccactt 443

                                                                       
Query: 365 aaacaaagttattaactcaagtggttacttatcctcactcagtaatgtaggttctacttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaacaaagttattaactcaagtggttacttatcctcactcagtaatgtaggttctacttc 383

                                                                       
Query: 425 tttaggaaacaacccagaaaacctttttgaaaatgaagtaggtaacagaaattgggatct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttaggaaacaacccagaaaacctttttgaaaatgaagtaggtaacagaaattgggatct 323

                                                                       
Query: 485 ttatcttgtgcaaatgtttgaattgactaaaacaaaacaatacctattttaaagaaaaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttatcttgtgcaaatgtttgaattgactaaaacaaaacaatacctattttaaagaaaaat 263

                                                                       
Query: 545 tatagtagaaaaccagagttaaaaagagttgaaaatgggaaactgaaaagtgggactagg 604
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tatagtagaaaagcagagttaaaaagagttgaaaatgggaaactgaaaagtgggactagg 203

                                                                       
Query: 605 ggtggagagatggctcggtagttaggagcactggctgttcttccagagaaccaggatttg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggtggagagatggctcggtagttaggagcactggctgttcttccagagaaccaggatttg 143

                                            
Query: 665 attcccaatacccagtggtagctcacaactatg 697
           |||||||||||||||||||||||||||||||||
Sbjct: 142 attcccaatacccagtggtagctcacaactatg 110


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)