BAC Information

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BAC

Clone NameMSMg01-270E16
Chromosome11 (Build37)
Map Location 97,916,917 - 97,917,426
singlet/doubletsinglet
Overlap genenone
Upstream geneOsbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2
Downstream geneFbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270E16.T7 (MSMg01no270_e16.b1)MSMg01-270E16.TJ (MSMg01no270_e16.g1)
ACCAG410168AG410169
length720740
length of high quality
(start - end)		318 (43 - 360)510 (119 - 628)
definitionCHROMAT_FILE: MSMg01no270_e16.b1 PHD_FILE: MSMg01no270_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:54 2005CHROMAT_FILE: MSMg01no270_e16.g1 PHD_FILE: MSMg01no270_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTCTGCCTCCTGGATGTCCCTCCCACCTTCTACTCTACCCTTTCCTG
TGGAGCATAGGTTTTTGTTTGTTTGTTTTTTAATTGCCAGGTGATGCATC
CATAGAATATACAAGATTTTCTTTCTATAGCCAAGTTTGGTCCCTAGAAC
CCAGATTCTAGCAGAGAAGTTACTCCTGCTAGAATTCAACCTCTGACCAT
GGCACATGTGTAGCGGCACTTGGCGTTCACGTGTGCATGCACTCACATAC
ATACAGACGAGAAGTAAATAAACATTTTGGAAGTGTATCATTTGATGCCT
ACTATTACATTTTTTAACACCCCGCACCGGCTTGGTGGTGGAGCTCTTGA
CTAGCATGTGAGAGGCTCTGGGTTCAGTCCTCAGCAACATGTTTATAAAC
ACACACACACACATACACACACACACACACACACACACACACACACACAC
ACACACACACTATACATTCCAAAACCAGTAACAACAACCAAACAAAAGCC
TGACTGGAATGAGGAGAAATCAGAGCTCTTTAAATTATTTTGGGGAGTGT
AAAAAGGTCCAATCGATATAGAAAATAATATAGTAGGTTTTCAAAAAAAT
TTAATATAAAATTCCATGTGTTTCTCCTGGGGAGACTAAACACATTTGTC
TACTCACCCCAGATAGGAAC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTGTGTAGCAGGCAAATGGCAAGG
AGTCTGGTGTCTATTCCTAGTTCTCATTGAGGAATTGAGAGTCTCATTGA
GTGTCTCAATAAATGGCTGAGGTGGGCCTTAAGGTTGCTCTTTAATGCGA
ATAGATCGACCTTCTTCCACAGCATCCTGAATAGCTGGGACTACAGCTAT
GCTGGGACTGCAGCTATGCTCTGCTATGCTTACTCCAGCCCTGGGCTGGT
AGAGAGCCTCATGATTCTCGGTGTCCCGTGCTGCCCAGGAAAACAAATGG
GCTATGTTTGTACAATCCTCAGAGGGGCAGGAGGGTCTTCAAAGGCTAAT
CATGAGGGTTCCTTTGGGGAGACACTTTGGAGGGCTGAGTTCAGTAACCA
CCTTGGTTCCTTTCAGTAGAGTCAGGAGCCAGAGGAATTCTGCAGCTGCC
ATTGAGCTGGAGATAATAGAGCTGGAGGGGGGAGGGATCTAAGCCCCCAC
AGCAGCCTGAACACCTGCCCGTGTCCTATTCTACCACTGGCAATCGGGAG
CTCTATTCGTGGACACAGGAGCCTGAGTAAGGCTCCAAGGGTAATCTTAT
CCTTGAGAGGATAGCCACTCTGCCCTTTCGGCCTCACATGGAGTTGGTCG
CTTTCATCACCTGAGTCCCTGAGTGCCACCCACGACAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_e16.g1 MSMg01no270_e16.g1 CHROMAT_FILE:
MSMg01no270_e16.g1 PHD_FILE: MSMg01no270_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:54 2005
         (510 letters)



>mm_chr11_97916583_97917492
          Length = 910

 Score =  940 bits (486), Expect = 0.0
 Identities = 504/510 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttctcattgaggaattgagagtctcattgagtgtctcaataaatggctgaggtgggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 agttctcattgaggaattgagagtctcattgagtgtctcaataaatggctgaggtgggcc 785

                                                                       
Query: 61  ttaaggttgctctttaatgcgaatagatcgaccttcttccacagcatcctgaatagctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ttaaggttgctctttaatgcgaatagatcgaccttcttccacagcatcctgaatagctgg 725

                                                                       
Query: 121 gactacagctatgctgggactgcagctatgctctgctatgcttactccagccctgggctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gactacagctatgctgggactgcagctatgctctgctatgcttactccagccctgggctg 665

                                                                       
Query: 181 gtagagagcctcatgattctcggtgtcccgtgctgcccaggaaaacaaatgggctatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 664 gtagagagcctcatgattctcggtgtcccgtgctgcccaggaaaacaaatgggctatggg 605

                                                                       
Query: 241 tgtacaatcctcagaggggcaggagggtcttcaaaggctaatcatgagggttcctttggg 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ggtacaatcctcagaggggcaggagggtcttcaaaggctaatcatgagggttcctttggg 545

                                                                       
Query: 301 gagacactttggagggctgagttcagtaaccaccttggttcctttcagtagagtcaggag 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 544 gagacactttggagggctgagttcagtatccaccttggttcctttcagtagagtcaggag 485

                                                                       
Query: 361 ccagaggaattctgcagctgccattgagctggagataatagagctggaggggggagggat 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 484 ccagaggaattctgcagctgccattgagctggaggtaatagagctggaggggggagggat 425

                                                                       
Query: 421 ctaagcccccacagcagcctgaacacctgcccgtgtcctattctaccactggcaatcggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctaagcccccacagcagcctgaacacctgcccgtgtcctattctaccactggcaatcggg 365

                                         
Query: 481 agctctattcgtggacacaggagcctgagt 510
           |||||||||| |||||||||||||||||||
Sbjct: 364 agctctattcctggacacaggagcctgagt 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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