BAC Information

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BAC

Clone NameMSMg01-270L14
Chromosome11 (Build37)
Map Location 83,916,896 - 83,995,166
singlet/doubletdoublet
Overlap geneTada2l, OTTMUSG00000000997
Upstream geneSlfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14
Downstream geneAcaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270L14.T7 (MSMg01no270_l14.b1)MSMg01-270L14.TJ (MSMg01no270_l14.g1)
ACCAG410481AG410482
length718743
length of high quality
(start - end)
674 (45 - 718)673 (71 - 743)
definitionCHROMAT_FILE: MSMg01no270_l14.b1 PHD_FILE: MSMg01no270_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:27 2005CHROMAT_FILE: MSMg01no270_l14.g1 PHD_FILE: MSMg01no270_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,994,494 - 83,995,166)(83,916,896 - 83,917,563)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGTTCAAGGCTACACATATGAAGTCCCTTCAAATAAAAACAAAA
CACTGGCTTTAGACCAGTTAAACCAGTCTGTGTGACAGGTAAAAATTTCC
TACTTATTAGCTGAAAAGTGCTCTACACCTGAACTCATTCACAGCACTTT
AGAGTTCTCCAAGGCTAGCTTTCACAATGACAGATCTTTGATAATACTTA
GTCATGGTCTGATGTAAAAATTCATTATTTCCCAACTTTCCCTTCCATTT
TGAAAACGACTTAATCTTTTCTTTGATGTATTTCTATCCTCTGGCAAATC
ACAAGCAAAACCTCTATAACATTAATAAGCGCTGGCAGCTCCAGAATTCA
GTATTTTACTGTTGACATCTTTCAAACCCACAAGTCTTGCTAATTATCAT
GGGGGTCACATCAATACTTCTGTTAAGGCTTAAATAGTATTTAGAAATAA
ACTGAAGCCAAAGAAGTGGGAAGAAACTTGCTACTTTGCAGCTAGCAAGC
ACCTACTACCTACACTGCTTTTTAGAAAAATCCTGTTAGACAACAACGCT
TTTCCAACAAGTGCTTGTCAAATGAACACACACACACACAAAAAAAATCC
CAAGACAGATGTCAAGGGCATCCCCATTCACCAAGCAACAGACAAATTAG
GGTTCTTCTATCCGCTAA
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTTTCCTTCTACTAGCTTTTGAGGGATCT
GTTTAGTCCTAATATGACAATAAGATCAGAGCAGTCTATTGAAGACAGTT
TCCAGAAGAGGAAGACTATGGGGTGGCTATGCACTCACACTGCGTGAACA
AATCGCCCACCTAAGTATGGCAGGCTGGGCTCTAGGTTGACACCTCTCTC
CAAGAGCACTGCAGATGACTTCAGATGGCAAGTTAGAGCTTGACATCATT
TCCACATTTTCCTTAATTCCATGGCTAAGTAAGGAACATAGTTTGAATGG
ACATATGCATATACAACCATTACCCAGCCCTCAGCCTGGGAAATAAACTT
TTGTTGGAAGACAGTTGTATCTATTTGTTTTGTTTATATATCATCTATGC
TTTGTTTGTTTGTTTGAGACAGGCTTTCACAGTACAACCCAGGCCTCTCT
AAAACTCAAAATGTTTGTATGCTACTTTCAAATAATAACATTAAAGTCTG
GCTGCAATAGGAACTTTATAATTGAAAAAGCTTAAAATGTAACCTGGTCC
TTGGCTTGTCAACCTTTGAAAACCCCTCACTGTGGAATGACAACTACAGA
CATTTCACACCTGTGAAGTCGGTGGGAGCAACACCACTATACCCTAAGAG
GTCAGTCCTCACTCAGAACTGTCACTGCTAAACAGGTAAGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_l14.b1 MSMg01no270_l14.b1 CHROMAT_FILE:
MSMg01no270_l14.b1 PHD_FILE: MSMg01no270_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:27 2005
         (674 letters)



>mm_chr11_83994290_83995366
          Length = 1077

 Score = 1270 bits (657), Expect = 0.0
 Identities = 668/673 (99%), Gaps = 3/673 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagttcaaggctacacatatgaagtcccttcaaataaaaacaaaacactggct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gaattccaagttcaaggctacacatatgaagtcccttcaaataaaaacaaaacactggct 818

                                                                       
Query: 65  ttagaccagttaaaccagtctgtgtgacaggtaaaaatttcctacttattagctgaaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ttagaccagttaaaccagtctgtgtgacaggtaaaaatttcctacttattagctgaaaag 758

                                                                       
Query: 125 tgctctacacctgaactcattcacagcactttagagttctccaaggctagctttcacaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tgctctacacctgaactcattcacagcactttagagttctccaaggctagctttcacaat 698

                                                                       
Query: 185 gacagatctttgataatacttagtcatggtctgatgtaaaaattcattatttcccaactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gacagatctttgataatacttagtcatggtctgatgtaaaaattcattatttcccaactt 638

                                                                       
Query: 245 tcccttccattttgaaaacgacttaatcttttctttgatgtatttctatcctctggcaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tcccttccattttgaaaacgacttaatcttttctttgatgtatttctatcctctggcaaa 578

                                                                       
Query: 305 tcacaagcaaaacctctataacattaataagcgctggcagctccagaattcagtatttta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tcacaagcaaaacctctataacattaataagcgctggcagctccagaattcagtatttta 518

                                                                       
Query: 365 ctgttgacatctttcaaacccacaagtcttgctaattatcatgggggtcacatcaatact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ctgttgacatctttcaaacccacaagtcttgctaattatcatgggggtcacatcaatact 458

                                                                       
Query: 425 tctgttaaggcttaaatagtatttagaaataaactgaagccaaagaagtgggaagaaact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tctgttaaggcttaaatagtatttagaaataaactgaagccaaagaagtgggaagaaact 398

                                                                       
Query: 485 tgctactttgcagctagcaagcacctactacctacactgctttttagaaaaatcctgtta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgctactttgcagctagcaagcacctactacctacactgctttttagaaaaatcctgtta 338

                                                                       
Query: 545 gacaacaacgcttttccaacaagtgcttgtcaaatgaacacacacacacaca---aaaaa 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   | |||
Sbjct: 337 gacaacaacgcttttccaacaagtgcttgtcaaatgaacacacacacacacacacacaaa 278

                                                                       
Query: 602 aatcccaagacagatgtcaagggcatccccattcaccaagcaacagacaaattagggttc 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aatcccaagacagatgtcaagggcatccccattcaccaagcaacagacaaattagggttc 218

                        
Query: 662 ttctatccgctaa 674
           | |||||||||||
Sbjct: 217 tcctatccgctaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1077
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1067
Effective search space:   708488
Effective search space used:   708488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no270_l14.g1 MSMg01no270_l14.g1 CHROMAT_FILE:
MSMg01no270_l14.g1 PHD_FILE: MSMg01no270_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:27 2005
         (673 letters)



>mm_chr11_83916696_83917768
          Length = 1073

 Score = 1268 bits (656), Expect = 0.0
 Identities = 666/670 (99%), Gaps = 2/670 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttccttctactagcttttgagggatctgtttagtcctaatatgacaataagatcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttccttctactagcttttgagggatctgtttagtcctaatatgacaataagatcaga 260

                                                                       
Query: 61  gcagtctattgaagacagtttccagaagaggaagactatggggtggctatgcactcacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagtctattgaagacagtttccagaagaggaagactatggggtggctatgcactcacac 320

                                                                       
Query: 121 tgcgtgaacaaatcgcccacctaagtatggcaggctgggctctaggttgacacctctctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcgtgaacaaatcgcccacctaagtatggcaggctgggctctaggttgacacctctctc 380

                                                                       
Query: 181 caagagcactgcagatgacttcagatggcaagttagagcttgacatcatttccacatttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 caagagcactgcagatgacttcagatggcaagttagagcttgacatcacttccacatttt 440

                                                                       
Query: 241 ccttaattccatggctaagtaaggaacatagtttgaatggacatatgcatatacaaccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttaattccatggctaagtaaggaacatagtttgaatggacatatgcatatacaaccat 500

                                                                       
Query: 301 tacccagccctcagcctgggaaataaacttttgttggaagacagttgtatctatttgttt 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tacccagccctcagcctgggaaataaacttttgttggaagacagctgtatctatttgttt 560

                                                                       
Query: 361 tgtttatatatcatctatgctttgtttgtttgtttgagacaggctttcacagtacaaccc 420
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtttatatatcatctatgct--gtttgtttgtttgagacaggctttcacagtacaaccc 618

                                                                       
Query: 421 aggcctctctaaaactcaaaatgtttgtatgctactttcaaataataacattaaagtctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aggcctctctaaaactcaaaatgtttgtatgctactttcaaataataacattaaagtctg 678

                                                                       
Query: 481 gctgcaataggaactttataattgaaaaagcttaaaatgtaacctggtccttggcttgtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gctgcaataggaactttataattgaaaaagcttaaaatgtaacctggtccttggcttgtc 738

                                                                       
Query: 541 aacctttgaaaacccctcactgtggaatgacaactacagacatttcacacctgtgaagtc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aacctttgaaaacccctcactgtggaatgacaactacagacatttcacacctgtgaagtc 798

                                                                       
Query: 601 ggtgggagcaacaccactataccctaagaggtcagtcctcactcagaactgtcactgcta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ggtgggagcaacaccactataccctaagaggtcagtcctcactcagaactgtcactgcta 858

                     
Query: 661 aacaggtaag 670
           ||||||||||
Sbjct: 859 aacaggtaag 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)