Query= MSMg01no270_l14.b1 MSMg01no270_l14.b1 CHROMAT_FILE:
MSMg01no270_l14.b1 PHD_FILE: MSMg01no270_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:27 2005
(674 letters)
>mm_chr11_83994290_83995366
Length = 1077
Score = 1270 bits (657), Expect = 0.0
Identities = 668/673 (99%), Gaps = 3/673 (0%)
Strand = Plus / Minus
Query: 5 gaattccaagttcaaggctacacatatgaagtcccttcaaataaaaacaaaacactggct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gaattccaagttcaaggctacacatatgaagtcccttcaaataaaaacaaaacactggct 818
Query: 65 ttagaccagttaaaccagtctgtgtgacaggtaaaaatttcctacttattagctgaaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ttagaccagttaaaccagtctgtgtgacaggtaaaaatttcctacttattagctgaaaag 758
Query: 125 tgctctacacctgaactcattcacagcactttagagttctccaaggctagctttcacaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tgctctacacctgaactcattcacagcactttagagttctccaaggctagctttcacaat 698
Query: 185 gacagatctttgataatacttagtcatggtctgatgtaaaaattcattatttcccaactt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gacagatctttgataatacttagtcatggtctgatgtaaaaattcattatttcccaactt 638
Query: 245 tcccttccattttgaaaacgacttaatcttttctttgatgtatttctatcctctggcaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tcccttccattttgaaaacgacttaatcttttctttgatgtatttctatcctctggcaaa 578
Query: 305 tcacaagcaaaacctctataacattaataagcgctggcagctccagaattcagtatttta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tcacaagcaaaacctctataacattaataagcgctggcagctccagaattcagtatttta 518
Query: 365 ctgttgacatctttcaaacccacaagtcttgctaattatcatgggggtcacatcaatact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ctgttgacatctttcaaacccacaagtcttgctaattatcatgggggtcacatcaatact 458
Query: 425 tctgttaaggcttaaatagtatttagaaataaactgaagccaaagaagtgggaagaaact 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tctgttaaggcttaaatagtatttagaaataaactgaagccaaagaagtgggaagaaact 398
Query: 485 tgctactttgcagctagcaagcacctactacctacactgctttttagaaaaatcctgtta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgctactttgcagctagcaagcacctactacctacactgctttttagaaaaatcctgtta 338
Query: 545 gacaacaacgcttttccaacaagtgcttgtcaaatgaacacacacacacaca---aaaaa 601
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 337 gacaacaacgcttttccaacaagtgcttgtcaaatgaacacacacacacacacacacaaa 278
Query: 602 aatcccaagacagatgtcaagggcatccccattcaccaagcaacagacaaattagggttc 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aatcccaagacagatgtcaagggcatccccattcaccaagcaacagacaaattagggttc 218
Query: 662 ttctatccgctaa 674
| |||||||||||
Sbjct: 217 tcctatccgctaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1077
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1067
Effective search space: 708488
Effective search space used: 708488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_l14.g1 MSMg01no270_l14.g1 CHROMAT_FILE:
MSMg01no270_l14.g1 PHD_FILE: MSMg01no270_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:27 2005
(673 letters)
>mm_chr11_83916696_83917768
Length = 1073
Score = 1268 bits (656), Expect = 0.0
Identities = 666/670 (99%), Gaps = 2/670 (0%)
Strand = Plus / Plus
Query: 1 attttccttctactagcttttgagggatctgtttagtcctaatatgacaataagatcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttccttctactagcttttgagggatctgtttagtcctaatatgacaataagatcaga 260
Query: 61 gcagtctattgaagacagtttccagaagaggaagactatggggtggctatgcactcacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagtctattgaagacagtttccagaagaggaagactatggggtggctatgcactcacac 320
Query: 121 tgcgtgaacaaatcgcccacctaagtatggcaggctgggctctaggttgacacctctctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcgtgaacaaatcgcccacctaagtatggcaggctgggctctaggttgacacctctctc 380
Query: 181 caagagcactgcagatgacttcagatggcaagttagagcttgacatcatttccacatttt 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 caagagcactgcagatgacttcagatggcaagttagagcttgacatcacttccacatttt 440
Query: 241 ccttaattccatggctaagtaaggaacatagtttgaatggacatatgcatatacaaccat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttaattccatggctaagtaaggaacatagtttgaatggacatatgcatatacaaccat 500
Query: 301 tacccagccctcagcctgggaaataaacttttgttggaagacagttgtatctatttgttt 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tacccagccctcagcctgggaaataaacttttgttggaagacagctgtatctatttgttt 560
Query: 361 tgtttatatatcatctatgctttgtttgtttgtttgagacaggctttcacagtacaaccc 420
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtttatatatcatctatgct--gtttgtttgtttgagacaggctttcacagtacaaccc 618
Query: 421 aggcctctctaaaactcaaaatgtttgtatgctactttcaaataataacattaaagtctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aggcctctctaaaactcaaaatgtttgtatgctactttcaaataataacattaaagtctg 678
Query: 481 gctgcaataggaactttataattgaaaaagcttaaaatgtaacctggtccttggcttgtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gctgcaataggaactttataattgaaaaagcttaaaatgtaacctggtccttggcttgtc 738
Query: 541 aacctttgaaaacccctcactgtggaatgacaactacagacatttcacacctgtgaagtc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aacctttgaaaacccctcactgtggaatgacaactacagacatttcacacctgtgaagtc 798
Query: 601 ggtgggagcaacaccactataccctaagaggtcagtcctcactcagaactgtcactgcta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ggtgggagcaacaccactataccctaagaggtcagtcctcactcagaactgtcactgcta 858
Query: 661 aacaggtaag 670
||||||||||
Sbjct: 859 aacaggtaag 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|