BAC Information

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BAC

Clone NameMSMg01-270P13
Chromosome11 (Build37)
Map Location 77,085,962 - 77,086,312
singlet/doubletsinglet
Overlap geneSsh2
Upstream geneNxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108
Downstream geneLOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270P13.T7 (MSMg01no270_p13.b1)MSMg01-270P13.TJ (MSMg01no270_p13.g1)
ACCAG410656AG410657
length722744
length of high quality
(start - end)		347 (376 - 722)673 (72 - 744)
definitionCHROMAT_FILE: MSMg01no270_p13.b1 PHD_FILE: MSMg01no270_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:45 2005CHROMAT_FILE: MSMg01no270_p13.g1 PHD_FILE: MSMg01no270_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTCTATAGCCCAGGTGCGCTTTGAACCTGTGAACCCTCTGTCTCATC
CTCCAAAGGACCTGTTATTCTATAGATGTATACCACCAGGTCAAGCTTCA
AAAACATTTTATTAAACTATGTTAAAATAATGTAACATTAAAATTGCTAC
CTCAAATATGTTTAGTGCAATTTGCCTGTGCATGCTTGCACACATATGTG
TATGTGTGAGTGGGTGTATGCGTAATCAGAGGCATGTGTGCATGGGTAGG
CCAAAGAGTAACCACGGTATCATCAGGAACACTGTACACCTCCTTTGAGA
TATGATCTTTCTTTATCCTGCACCTCATCAAGTAAACTAGACTTGATGGC
TGGTGAGCCCTAGGGATTCTCTTGACTCCATCTTCCCAGTACTAAGATTG
CAAGTGTGCACCACTAAATCTGGTTATGTCTACATGGATTTCGGGAATTA
AGTTCAAATCCCCACATAATGGATCATGCCGTTCCACCCTGCCCCTGGCC
AGGTCATGTCTCAACCATTTTAAAGTTACAGTTCAGTAGATTCACATTGT
TGGGTGACCAATCTCAACAGTTTTTTCATTTTACAAAACTGAAACTATAT
ACATTGTAATAAATAACTCATTTCTTTATTTTCTGAGCCTGGCAACTACC
ATTCATTTTTGTTTCAATGAAT

GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGCTTTTTTTTTAAAAGATTTATTTAT
TTTATATAGGTGAGTACACTGTTTCTGTCTTCAGACACACCAGAAGAGGG
TATCAGATCCCATTACAGATGGTTGTGAGCTACCATGTGGTTGCTGGGAA
TTGAACTCAGGACCTCTGGAAGAGCATTCAGTGCTTTTAACCCCTGAACC
ATCTCTCCAGCCCTCAACCTGTCTTTTTATGTCAATACCATGCAGTTTTT
ATTTCTATAGCTCTCTAGTACAGCTTGAAATCAGGGGTGGTGCTATCCCT
GGAAGTTCTTTTACTGTAGAGGATTGAAACAAAGACTTTTACTATTTTTC
TACCATTATTCCTTAGCATGTAAGGATCAAATTAGTATATCTTTGAAAAA
TATTGTATTAGAATATTTGATTTTAAAAATTTCTCACTTGAGTTTCATAA
AAAAATTGTTAAATTAATATTCATTTGGGACTAGGACAGAGTTCCTGACA
TACTTCTACCTTTTGTACTATGGATCTATGTAAAGTTGTGTTCTTAGATT
GGTGATTATAAAAACAGCACATCAATCAACCATGAAAACTGTTAGAGATA
TACTTTGTGGCATAGCATCAAATGTTCAGCCAAGCTTTTAATCCATATCA
TTGGTTTCCAAAATTTCTTTTTTATCTTTAGTAATTTTACATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_p13.b1 MSMg01no270_p13.b1 CHROMAT_FILE:
MSMg01no270_p13.b1 PHD_FILE: MSMg01no270_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:45 2005
         (347 letters)



>mm_chr11_77085930_77086676
          Length = 747

 Score =  636 bits (329), Expect = 0.0
 Identities = 345/351 (98%), Gaps = 4/351 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcaagtaaactagacttgatggctggtgagccctagggattctcttgactccatcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 catcaagtaaactagacttgatggctggtgagccctagggattctcttgactccatcttc 324

                                                                       
Query: 61  ccagtactaagattgcaagtgtgcaccactaaatctggttatgtctacatggatttcggg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 323 ccagtactaagattgcaagtgtgcaccactaaatctggttatgtctacatggatttgggg 264

                                                                       
Query: 121 aattaagttcaaatccccacataatggatcatgccgttccaccctgcccctggccaggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aattaagttcaaatccccacataatggatcatgccgttccaccctgcccctggccaggtc 204

                                                                       
Query: 181 atgtctcaaccattttaaagttacagttcagtagattcacattgttgggtgaccaatctc 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 203 atgtctcaaccattttaaagttacagttctgtagattcacattgttgggtgaccaatctc 144

                                                                       
Query: 241 aacag--ttttttcattttacaaaactgaaactatatacattgt-aataaataactcatt 297
           |||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 143 aacagttttttttcattttacaaaactgaaactatatacattgtaaataaataactcatt 84

                                                              
Query: 298 tctttattttctgagcctggcaactaccattca-tttttgtttcaatgaat 347
           ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 83  tctttattttctgagcctggcaactaccattcattttttgtttcaatgaat 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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