BAC Information

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BAC

Clone NameMSMg01-271E06
Chromosome11 (Build37)
Map Location 21,043,122 - 21,043,404
singlet/doubletsinglet
Overlap genePeli1
Upstream geneRab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035
Downstream geneVps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1, Ehbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271E06.T7 (MSMg01no271_e06.b1)MSMg01-271E06.TJ (MSMg01no271_e06.g1)
ACCAG410870AG410871
length741746
length of high quality
(start - end)
363 (379 - 741)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no271_e06.b1 PHD_FILE: MSMg01no271_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:06 2005CHROMAT_FILE: MSMg01no271_e06.g1 PHD_FILE: MSMg01no271_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCAGTGAATCCATCAGAGCCTGGGCTGTTTTAAACTGGAATTTTT
TTTAAATCACTGTTTATAGACCCATCTAAATGATTTCATCTTGCTCAACT
TTAATAAGTCAGATAGATCTAGAAATCCATACATTCCTTTTAGATTTTCC
AACTTAACACAGTTACAATTTTAAGGTTTGTCCTTCATTGGTGACTGTCA
TAATGTCTCTTGTTTCTAATTTTGTTAATTTGGGTTTTTTCTTCTGTTCT
TTTGGTTAATTAGATAAGAACTTGGCAGTCTTGTTTATCCTTCCAAAGGA
ACAATGAATTTTATTGACTATCCCCCTCTATTTCATTAAGTTCTGCCCTA
ATAATTATCTCTCTTCACCTACTGCTTTTGGGGTTAGTTTGTTCTTGTCT
TTCCAATGTCTTAAATGCATCATTAAAATATTTATTTGAGTTTTCTATGA
TTATTATTATTGTTACATTATGTTACACAAGCTATAAATTTCTCTCTCGG
GGATTGCTTTCATTGTATTACATAAGTTTTGAGATGTTATATTTTCATTT
TTACTCAAGTCTAGGATTTAAAATATTTTATATTCTAATTTCTTCAGTGA
CCTGTTCATTCTTCAATCGTACATTGTTTAATCTTCATGAGCTTGTATAT
TTTCTATTGTTAATGTATAGCATCATTCCATTTTGGTCAAN
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGGCCTTTCCCCCTTGATCACTAA
TTGAGAAAATGCCTTACAGCCCGATCTCATGGAGGTATTTCCTCAACTGA
AGCTCCTTTTTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACTA
GCCAGTACATAGTAGCTCTGCCCAGACGTGTGCTGAAAACCAAATCCCTA
CTACTGATGTCAATAGTTAGAAAATTTTCTGTAATTTTTGTTGCTCAGAG
AGGAAGGTAGGAGGTAGTGCCTTCTCCCGCCACCCCCCCCCCCAGGGGTC
CGAGGGAGATTCTTTTCTCCCCACCCCCCCCAGGAGGACATGGGGGCACA
GAGTAGCTAAATGTTTACCAGGAGATAAAATCCCACGGTCCCTTCCCCCT
CTTCTTTATTTTCTTTTTATTTCACGTGTACGTATGAGTGCCTGTATGCA
TATATGTGCACCATGGGTGAGCCTATTGCTCTTGGAGGCCAGAAGAGATA
TCAGATTCCCTATAACTGGAGTCCCAGGTAGTTATGAGCCACCTAATGAG
GGTGCTGGGAACCCGAGTCCTCTGCAAGAGCTACAAGTGCTCTTAACTTC
AGAGTCCATCTTTAAACCACACTGTTATGACATTTAACTGAGGTTAAAAA
AATCAATACATATTTTAAAACATACAGCATGATAGCCTAATATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_e06.g1 MSMg01no271_e06.g1 CHROMAT_FILE:
MSMg01no271_e06.g1 PHD_FILE: MSMg01no271_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:06 2005
         (285 letters)



>mm_chr11_21042788_21043471
          Length = 684

 Score =  495 bits (256), Expect = e-144
 Identities = 277/284 (97%), Gaps = 1/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggcctttcccccttgatcactaattgagaaaatgccttacagcccgatctcatggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 617 agggcctttcccccttgatcactaattgagaaaatgccttacagttggatctcatggagg 558

                                                                       
Query: 61  tatttcctcaactgaagctcctttttctgtgataactccagctgtgtcaagttgacacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tatttcctcaactgaagctcctttttctgtgataactccagctgtgtcaagttgacacaa 498

                                                                       
Query: 121 aactagccagtacatagtagctctgcccagacgtgtgctgaaaaccaaatccctactact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aactagccagtacatagtagctctgcccagacgtgtgctgaaaaccaaatccctactact 438

                                                                       
Query: 181 gatgtcaatagttagaaaattttctgtaatttttgttgctcagagaggaaggtaggaggt 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gatgtcaatagttagaaaattatctgtaatttttgttgctcagagaggaaggtaggaggt 378

                                                       
Query: 241 agtgccttctcccgccacccccccccccaggggtccgagggaga 284
           ||||||  ||||||||||||||||||| ||||||||||||||||
Sbjct: 377 agtgccccctcccgccacccccccccc-aggggtccgagggaga 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space:   186300
Effective search space used:   186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)