BAC Information

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BAC

Clone NameMSMg01-271F03
Chromosome11 (Build37)
Map Location 69,284,881 - 69,285,188
singlet/doubletsinglet
Overlap geneDnahc2
Upstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3
Downstream geneEfnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271F03.T7 (MSMg01no271_f03.b1)MSMg01-271F03.TJ (MSMg01no271_f03.g1)
ACCAG410907AG410908
length709738
length of high quality
(start - end)		314 (52 - 365)289 (70 - 358)
definitionCHROMAT_FILE: MSMg01no271_f03.b1 PHD_FILE: MSMg01no271_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:10 2005CHROMAT_FILE: MSMg01no271_f03.g1 PHD_FILE: MSMg01no271_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNACTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTGATTTTCCTACCTCTACTCCCATTTTCTGTTTATATG
GCTGGGTGTGTGGGGCTCCTGCAGGCGACAGTGCACTTGGGATCTTTATG
CCATGTCCCTGTCATTCTTCTTGGGTCAGAAGAATTCCCCGGAGAGAATG
AATACTTTCACTTGCCTGTCTGGATGCCTCAATTCTTTAAGCCGAGAGAT
GAAAGAAAGCATCTAGTCTGCAAACGTTCCCTCAGTACTGGTTAATCTGA
CTCATTCCTCTCCTGCCTGCTGTTTTTTATGCTCGACACCTCTACTCAGC
AGGGGAGGCTCTGGCATCCGTTCCTATTCGGACCCAGATCTTAGAGATAC
AGCTCCTTTCTTCTCCTGGGACAGAAAAAAGAAACACAACTCTAGCTGGC
TTCAGCGAACAGCTCCTTTTCCCAACCTCCATCCACAGCGGTCAGGCTGG
TGCTGCCCTCAGGGCTCTTCTGGACTGAGCTCCTCCAGAAGCCATTCTTC
CCTTTGCTCCCACCAGTCGCCTGGGGGCACTGACAATGGACACCCCCTTC
TCCTGCCCTGCAGGTGAAGCTTGAGACTTTACACCATAGAGTGAATGCTG
ACTGTGGACAGTGTGAGGCTGAGCTGAAGAGACTGCAGGAATCCTTTGAC
CCCTCCCTG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTATGTAGACCAGACTGTCCTCAAAGATCC
TCTCAGATATCCTCTATACCTGCTTCTGGACTGTCCGCTTCTCCCCCCCC
CCTTGAGATAAGGGCTCATCTGCAGACTGAGCTTGGGCTCCGTGAGTAGC
TGAGGATGACCTTAGACTCCTCATCTTCATGCTTCAAGTGCTAGGATCAC
AGGCATGCACTGCTACGCCCTGCTCGTAAACATAGGTGGAAAAACCCCTT
TGTGTGCACGTGATATGTGTGTGTGCGCGTGTGTGAATTTTGGGACATGC
AGAGGTCTATAATCACTTCTGGGCATGCCTCACTGCTTTCCATGTTGATT
GAGACAGGGCCCCTCGTTCAAAGAATGAAAAAGAGGGGATTGTCTTGTCT
CTACCTTGTGTCTTGTCATAGGGCTCTGGGATTGCAGGCAGGAGCTGCTG
CGTCTGGCAGAAGCGGGTTGTAGAATTGTGGAGAGAGGGAGTGAACTTGG
TGGTTAGAGGTGGTAATGACNATCTGCTGAGGACTCGGACTGTGTTANCC
TGTGTTGGCGGTTAACTGAGGTTATTGCTTGTGTCTCCCAGGACGCCAAT
GCCCGCCAGTCTCCTGTTCTATCGCATTGTGATCCCGGGTTTCTTTCTCA
ACCCTCCTTTATATAGTAGCCTGCGTTGTATGTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_f03.b1 MSMg01no271_f03.b1 CHROMAT_FILE:
MSMg01no271_f03.b1 PHD_FILE: MSMg01no271_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:10 2005
         (314 letters)



>mm_chr11_69284677_69285390
          Length = 714

 Score =  557 bits (288), Expect = e-163
 Identities = 303/308 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgattttcctacctctactcccattttctgtttatatggctgggtgtgtgggg 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgattctcctacctctactcccattttctgtttatatggctgggtgtgtgggg 264

                                                                       
Query: 65  ctcctgcaggcgacagtgcacttgggatctttatgccatgtccctgtcattcttcttggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcctgcaggcgacagtgcacttgggatctttatgccatgtccctgtcattcttcttggg 324

                                                                       
Query: 125 tcagaagaattccccggagagaatgaatactttcacttgcctgtctggatgcctcaattc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagaagaattccccggagagaatgaatactttcacttgcctgtctggatgcctcaattc 384

                                                                       
Query: 185 tttaagccgagagatgaaagaaagcatctagtctgcaaacgttccctcagtactggttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttaagccgagagatgaaagaaagcatctagtctgcaaacgttccctcagtactggttaa 444

                                                                       
Query: 245 tctgactcattcctctcctgcctgctgttttttatgctcgacacctctactcagcagggg 304
           |||||||||||||||||||||||||||||  | | |||||||||||||||||||||||||
Sbjct: 445 tctgactcattcctctcctgcctgctgttcctcaggctcgacacctctactcagcagggg 504

                   
Query: 305 aggctctg 312
           ||||||||
Sbjct: 505 aggctctg 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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