Query= MSMg01no271_m23.b1 MSMg01no271_m23.b1 CHROMAT_FILE:
MSMg01no271_m23.b1 PHD_FILE: MSMg01no271_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:46 2005
(694 letters)
>mm_chr11_35462684_35463780
Length = 1097
Score = 1234 bits (638), Expect = 0.0
Identities = 678/692 (97%), Gaps = 3/692 (0%)
Strand = Plus / Plus
Query: 6 gaattcctgagtgttttccaatttcagctgcttgcaagctgtggccacacttagctctac 65
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 206 gaattcctgagtgttttggaatttcagctgcttgcaagctgtagccacacttagctctac 265
Query: 66 caggaatacaaacaagcatttcttcttccttctttggtttcctagaaaatgtctcaagtg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caggaatacaaacaagcatttcttcttccttctttggtttcctagaaaatgtctcaagtg 325
Query: 126 atggtttaaaccaagggccttcaataatagctgctacaagcttcaagccttccaagaacc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atggtttaaaccaagggccttcaataatagctgctacaagcttcaagccttccaagaacc 385
Query: 186 agataacccttgaa--t-acaaagcagagaacatgaggcaaggcccatgagctttgtccc 242
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agataacccttgaacatgagaaagcagagaacatgaggcaaggcccatgagctttgtccc 445
Query: 243 tcaacaatctcactgtcttgccttgttggaatccagaagggtaaaattatgccctgagca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcaacaatctcactgtcttgccttgttggaatccagaagggtaaaattatgccctgagca 505
Query: 303 agtggtaatgaaagaagtcatgtctccttgagagggtaaaggagccagtccacaagagac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agtggtaatgaaagaagtcatgtctccttgagagggtaaaggagccagtccacaagagac 565
Query: 363 aagaagggttctttcacaaagtcagaagcccactaatgaaaagtcccagaaagccaccat 422
|| ||||||||||||| ||||||||| || ||||||||||||||||||||||| ||||||
Sbjct: 566 aaaaagggttctttcataaagtcagaggctcactaatgaaaagtcccagaaagtcaccat 625
Query: 423 ttggtccccattcttgttcttcagaaaccaacatctctatgagcatttctcaaactcagg 482
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttggtccccattcttgttctccagaaaccaacatctctatgagcatttctcaaactcagg 685
Query: 483 gctatggacatctgaggctagatatctattggttaggggagttgttgtgattattatgag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gctatggacatctgaggctagatatctattggttaggggagttgttgtgattattatgag 745
Query: 543 acactcagcagtgaccttggcttctattagatgccagtagcgctttacccaacagtgaca 602
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 746 acactcagcagtgaccttggcttctattagatgccagtagcgctttacccaaaagtgaca 805
Query: 603 gccaaaaatgtctgtagacattatcaaatgtcatggcagaaaaagaatgcccagttgaga 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gccaaaaatgtctgtagacattatcaaatgtcatggcagaaaaagaatgcccagttgaga 865
Query: 663 accacggctctgctgtgtggaattgcccaggg 694
||||||||||||||||||||||||||||||||
Sbjct: 866 accacggctctgctgtgtggaattgcccaggg 897
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1097
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1087
Effective search space: 743508
Effective search space used: 743508
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_m23.g1 MSMg01no271_m23.g1 CHROMAT_FILE:
MSMg01no271_m23.g1 PHD_FILE: MSMg01no271_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:46 2005
(236 letters)
>mm_chr11_35616023_35616658
Length = 636
Score = 439 bits (227), Expect = e-128
Identities = 233/235 (99%)
Strand = Plus / Minus
Query: 1 aatcccagcacttgggaggcagaggtaggcagatttctgatttcgaggccagcctggtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aatcccagcacttgggaggcagaggtaggcagatttctgatttcgaggccagcctggtct 462
Query: 61 acagagtgagtttcaggacagccaggaacaggaacaaagaggtcccaccacacagagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 acagagtgagtttcaggacagccaggaacaggaacaaagaggtcccaccacacagagaag 402
Query: 121 ctagcctcagaccagcagttccctggtaggggcagtggatacaaaaccatatctaataga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctagcctcagaccagcagttccctggtaggggcagtggatacaaaaccatatctaataga 342
Query: 181 acgccccaggaaacctggactttcctaccctagaacaagctgcagccctcatgag 235
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 341 acgccccaggaaacctggacaatcctaccctagaacaagctgcagccctcatgag 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space: 142329
Effective search space used: 142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
