XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAT
GGTCTTCCCCCTAGAAACTATTTTTTTTCATGCAAAAAAATATATTCTAC
ATGATGCATAGATGTGTTGAAAACCATTTGCTCATGGAAACAGTGGTAAC
TATAGTTCAGGAGATGCTTCTCAACTCCATGGAGCTTGGAATAGAAATCT
GGAGGAGGGAAATTCCACAAAAGATCACAGATGTATTATTTGCAGATTAG
CCAACATATGGCATGTTTAATTGCAGTTCTGAAACTGAAGCAAGGCTAAA
ACTGATATTTTATTTTTAAAATTTCAGGCTATAGTGCCTTCTAAGTATCA
TCTAGAAATGGTTGTTCTCCCCCCCANCCACTCCAAATTACCTAAGGCAT
TTTTCATAGGCTAAAACTTGAAGTGAAAATTTCAAAGTAGTCCAAACTCT
GGAGAGAGAAAAAGACATTTTAAGTGCGTTAACCTTCCATCCAATGGTAG
AGGCACATTCTCCTTCACCATTTTTACTTCTTTCTTTTTTAAGCGAGACC
ACAATATATAAAACAAATCCACGTTTCCAATAATTTGACTTAAGTGTTAA
AGAATTGGGACAAAGTGCATGAAGCTGGGGGATTATGGTTGGCGATGGAA
TTGGAAGGAAAGAGTATATGGACATGTTCAAACTACCCTGTAGTCACATA
TCAATCTATCAAATATTAAATTATAATGTTATATAAAAAGTAAAAACCTT
CTTCCCA

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGAATAGTCACATTAAGGTCCAACTCATCATGA
CTGAAGTCAGCCAATCACTCCATTTAATTACTATGGAGCAAAATGAGCCC
ACAGTCAGAGGCTCCATGTCCTCCATGCAAGTCACTTAATATTGTTCCTG
CTTTTAATTTAACCTTCAGTACATTGTTTCCAAGCATACTGTATACCAGT
CAGGTATGAATATTGCTCATACTTTCATAGGTTCACAAGCAGAATTTTCA
CCAGACATAATCAATTCTTTCTTTTAAAAAATGGGATAATCAAGAACTCT
ATGCTTAATTCTTTTTTTGCCACCCCCCCCCAGGAAATAGATATTATTTT
AAAATAGATACACTTTGCCTAAAACAAATTTTTGAAGATGAACATATAAG
CTACAGTTCTTTAGATTCTCGGGTATTTCTACAGATAAGGAAGTATCAGA
TGTCAACAGTAATGTGAAAAAAAAACATAAACCACTTGTTCTGGGTCAGA
AGAAGTTATTCACCAGACAAGAGTATGCATTGCTCCCAGCCATATTTATT
GAGCACTGACTATCTGCCAGGCACAGTGCAAGATGTTGAGAAGTAAAAGA
AGAAACCACAAGAACTCTGCCTACAAGGCATTCACAGTCACTAGAAGCAG
ATATTGAAATAGAGAGCAAGTTCTGTTGAGAACGCACATCGTCTAAGTAA
GGTAAAA

Query= MSMg01no272_j08.b1 MSMg01no272_j08.b1 CHROMAT_FILE:
MSMg01no272_j08.b1 PHD_FILE: MSMg01no272_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:46 2005
         (321 letters)



>mm_chr11_41861537_41862257
          Length = 721

 Score =  590 bits (305), Expect = e-173
 Identities = 314/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctatggtcttccccctagaaactattttttttcatgcaaaaaaatatattctac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattcctatggtcttccccctagaaactattttttttcatgcaaaaaaatatattctac 462

                                                                       
Query: 65  atgatgcatagatgtgttgaaaaccatttgctcatggaaacagtggtaactatagttcag 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 atgatgcatagatgtcttgaaaaccatttgctcatggaaacagtggtaactatagttcag 402

                                                                       
Query: 125 gagatgcttctcaactccatggagcttggaatagaaatctggaggagggaaattccacaa 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gagatgcttctccactccatggagcttggaatagaaatctggaggagggaaattccacaa 342

                                                                       
Query: 185 aagatcacagatgtattatttgcagattagccaacatatggcatgtttaattgcagttct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aagatcacagatgtattatttgcagattagccaacatatggcatgtttaattgcagttct 282

                                                                       
Query: 245 gaaactgaagcaaggctaaaactgatattttatttttaaaatttcaggctatagtgcctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gaaactgaagcaaggctaaaactgatattttatttttaaaatttcaggctatagtgcctt 222

                            
Query: 305 ctaagtatcatctagaa 321
           ||||| |||||||||||
Sbjct: 221 ctaagcatcatctagaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no272_j08.g1 MSMg01no272_j08.g1 CHROMAT_FILE:
MSMg01no272_j08.g1 PHD_FILE: MSMg01no272_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:46 2005
         (305 letters)



>mm_chr11_41724072_41724776
          Length = 705

 Score =  569 bits (294), Expect = e-166
 Identities = 294/294 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatagtcacattaaggtccaactcatcatgactgaagtcagccaatcactccatttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaatagtcacattaaggtccaactcatcatgactgaagtcagccaatcactccatttaa 260

                                                                       
Query: 61  ttactatggagcaaaatgagcccacagtcagaggctccatgtcctccatgcaagtcactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttactatggagcaaaatgagcccacagtcagaggctccatgtcctccatgcaagtcactt 320

                                                                       
Query: 121 aatattgttcctgcttttaatttaaccttcagtacattgtttccaagcatactgtatacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatattgttcctgcttttaatttaaccttcagtacattgtttccaagcatactgtatacc 380

                                                                       
Query: 181 agtcaggtatgaatattgctcatactttcataggttcacaagcagaattttcaccagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcaggtatgaatattgctcatactttcataggttcacaagcagaattttcaccagaca 440

                                                                 
Query: 241 taatcaattctttcttttaaaaaatgggataatcaagaactctatgcttaattc 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatcaattctttcttttaaaaaatgggataatcaagaactctatgcttaattc 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)