BAC Information

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BAC

Clone NameMSMg01-273L21
Chromosome11 (Build37)
Map Location 75,348,444 - 75,348,720
singlet/doubletsinglet
Overlap geneSlc43a2
Upstream geneGarnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1
Downstream genePitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al, 1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273L21.T7 (MSMg01no273_l21.b1)MSMg01-273L21.TJ (MSMg01no273_l21.g1)
ACCAG412662AG412663
length7301,017
length of high quality
(start - end)
277 (386 - 662)---
definitionCHROMAT_FILE: MSMg01no273_l21.b1 PHD_FILE: MSMg01no273_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:10 2005CHROMAT_FILE: MSMg01no273_l21.g1 PHD_FILE: MSMg01no273_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACACCATCATTCTCAAAGACAACAAAAAGCTGTGACATTCGACTCTCCA
TCAGCTGTATACAGGTCAGCTCCCTAAAGGCCTAAAGCGATCCACTTAGC
CATGCACCAGGGCTGACGATGTTGGGCCACACTGCAAACCTTGACCTTAG
CTTTACCAGACACTCCCAGTCAAGGAAGCGCAGAGGTTTCTGGCCCCAAA
AGTCAACAGGTTCCCGGGACTCCACACAGCCAGGAGGCTGGAGAGATAAG
CTGTGTAGAATCAGCCTCCCCAGCTAATGATGCTAGGTCAGCGCGTTTGC
CAGATAATCAGAATTTTTTTTATCCCACACACCACCAAAGGCACGGCATA
AGAAGTTGATGTTCAACCCATGATCCTGACCCTTTCCCCTTCACTCTGGT
TTGTGGGAGTGACCTTCAAGTCTCTCAAGGGCTTAAATACCAACTCAGCG
CTCTGCTGGCGAAATCCCTGGACTCCCCTCACCCAAAGGAAGGAAGAAGA
CAGCGTCTCCCCAGGAAAACAGTTTCCAGCCCCAGGGTGCCCATGCCGTC
CGAGAAATTGTATAAAAGTGGACAATCTGATGTCACCAGTGCCATGAGTC
AGAAAAAAAGAAAAAGAGATAAAATAAGAATAAGAACAAGATTAAGAGAA
GAGAAGAGATAAAATCTGACCTCAGGATGA
GCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXNATCTCGCCAAAATATCTTTCNNTGCGTGTGTGTGT
GTNNGTGTGTGTGTNNGTGTGTGTNNGTGTGTGTGTGTGCTGACAGTGNN
ATGNNAGAATGTGTATAGGNTTGNATAGTGTATGGTAATATGGTATAGTT
AGATGGAGAGATGTAATGGTTGATGGTGGGGTTTGTATTATATTTAATTN
NTATGATGTAATTTAGATTGATATATTATAGTTAATGTATTATATTTGAT
TTTTTTTTTATTNTATTGTGTTAATATGATTATATATTGATGGGGTTTAG
TATATGNTAATGTGNTAAATAAGATGAGAAAGAAGTTTTTTTTTTTTTGT
GGAGAGAGAGGAAAGAATGAAGGGGAAGAGGAAGGTTTTGGGGGGGTGAA
CCCTCCAAGAAACCAAAANTCCCCTTTTTTTTTTTTTTTTAGTGTTTTTT
TGNTTTTTTTTTGTTTGTTGTTTTTAAAAAGGTGTNTATTGTTNTAGAAA
AGGGGGGGGGGGGTGGGGGGTGGTTNTTTNNTTTTTNNTTTTTGTTTTTT
TTTTGTTTTTTTTNTTGTTTGGTTTTAGGGTTGTTTTGGNGTATTTTGNG
TGGTTTTGGTTGTTGTATATTGTATTTGTGATAATTGTTATTTTTATAGA
GAAGTAATTTATTATATGGGTTTTAATTTTTATTATATTTTATTATTAAA
GAATTGTAATTATATTTATTATATTAATGGTTAGTTATATGATATTGATA
ATATATTGTATTATTGATAATTATTAAATTAGTATGTATTGTTGTTTGTT
ATTNATTTTGATTAATTTATGTATATGTTATAAATAANATTATGAGAATT
GTATGAGTGTATTAGATTTTTAGTAGGAGTTAGAGAAGAGTAGTGTATAN
AAANGATATATGTAAATTATTATTTATTTTTGATATTTGTTAGTGTTTTG
TGTAGTTTGTATGAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_l21.b1 MSMg01no273_l21.b1 CHROMAT_FILE:
MSMg01no273_l21.b1 PHD_FILE: MSMg01no273_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:10 2005
         (277 letters)



>mm_chr11_75348244_75348920
          Length = 677

 Score =  513 bits (265), Expect = e-150
 Identities = 274/277 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaggcacggcataagaagttgatgttcaacccatgatcctgaccctttccccttcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 caaaggcacggcataagaagttgatgttcaacccatgatcctgaccctttccccttcact 418

                                                                       
Query: 61  ctggtttgtgggagtgaccttcaagtctctcaagggcttaaataccaactcagcgctctg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 417 ctggtttgtgggagtgaccttcaagtctctcaagggcttaaataccaactcagcgctcgg 358

                                                                       
Query: 121 ctggcgaaatccctggactcccctcacccaaaggaaggaagaagacagcgtctccccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctggcgaaatccctggactcccctcacccaaaggaaggaagaagacagcgtctccccagg 298

                                                                       
Query: 181 aaaacagtttccagccccagggtgcccatgccgtccgagaaattgtataaaagtggacaa 240
           |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 297 aaaacagtttccagccccagggcgcccatgccgtccgagagattgtataaaagtggacaa 238

                                                
Query: 241 tctgatgtcaccagtgccatgagtcagaaaaaaagaa 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 tctgatgtcaccagtgccatgagtcagaaaaaaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)