BAC Information

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BAC

Clone NameMSMg01-273N06
Chromosome11 (Build37)
Map Location 48,893,508 - 49,012,391
singlet/doubletdoublet
Overlap geneOlfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9
Upstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik
Downstream geneZfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273N06.T7 (MSMg01no273_n06.b1)MSMg01-273N06.TJ (MSMg01no273_n06.g1)
ACCAG412726AG412727
length731735
length of high quality
(start - end)		596 (38 - 633)295 (71 - 365)
definitionCHROMAT_FILE: MSMg01no273_n06.b1 PHD_FILE: MSMg01no273_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:16 2005CHROMAT_FILE: MSMg01no273_n06.g1 PHD_FILE: MSMg01no273_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,011,799 - 49,012,391)(48,893,508 - 48,893,802)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCGCC
AGTCTGACACAGAGGAAGTCAGGTGTACAGGGAATGAATGAGAGGTAATG
AACCATGTGACAAATGTGGACCAGATAAACTGGTTATTAAGTTATACAAG
CCTAAGGTATAAGGACTAAGCTTTCATAAATAATAAAAGTCTCCACGTCA
TTGTTAGAGGCTGCCAGGTCGAGACAGGCTGGAGAAATATTGGAGTCTTA
GTCACCAGACTGTGACATTATTAGGAGGTGGCTGAACCTACTGAAGGAAG
TTAGGCCATTGAGAATGTGACCTGCTGGCTCTCTTTGCTTTCTGGCTGAC
TTGGGGTGGGCAGCTTTTCCTATACCACATGCTCCTACTACAATATACTA
TGCTGCCACAGACAGATCTAAAGCAATAGGGCCAAGAAATCATGGATTAC
AACTTCTGAAACTGTTAGCCAAATTAAGCCATTCTTCTCTTTAATTTGAT
TTAGCTTAGGTATTTCTCATCGTGACAGATAACAGACTAACACACATTGT
GAAATGACATAGTGAAAGGTGATTCGTCGTTGTATTAATTAAGTAAAATT
ATTTTTAGTAATATTTTTTGTGAGCGCCCGACTTCCCAGCATAGCAGACG
CCACAACAGGATCCTTCTGCACACGTTTATTGGGAGAGCTTGATTGCAGA
GGTGAAAAGACCCTGAGCCCAGAACTGGTGG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCTGGTTTTCATGAGAATGACATAGGTAA
AGGTCCAGACAGAGAATTCCCAAGGATGATTATCAATATGATCAAGGAAA
AAGGACTCAGTCAGATAAATGACAATCAGGGGTCAACAAAGGGCATGATA
ATGGAAGTGAATAAAAAGAAATACTGAAGAAACCTGTGTCTTATATGAGG
CTAAAATTATTTTTTTTTGTAAATCAAATGCTCAGTGGAAAGGCACATTA
ACACAATGGATCACCTGAAAGAGAGATTATCTGAAGTTTTAGGTATATAT
AGATAATATAGTATTTTAAGACTTCGCCCCAGCTTGGCCATAATAATTGA
AAAACCTATGAATAAACCATGTGTAATCTTTGGAACACCAGAAAATAGAA
GAAGAAGAACTCCTTTCCCATAGCATACAATATATATTCAATGAATCCTA
GCAAAAATGTCCCCCAATTAAGGGACAGCAAGGCACATCTAGATACATGT
AGAACTCCAGATATACAGGGCAGAAAAAGTAACTCCTGAAGTCATACTAT
AGTGAAAATCCAGAATGTATTAAGCATATCATTTTGTACACTGCACGAGA
GAAACAGGAAGAACTATAAAATAGGCCCTTCATAGTAGCAAGTGACAGAA
GGCAGAAAAATCTTTTGAAACTAGAGGCCCTAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_n06.b1 MSMg01no273_n06.b1 CHROMAT_FILE:
MSMg01no273_n06.b1 PHD_FILE: MSMg01no273_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:16 2005
         (596 letters)



>mm_chr11_49011799_49012794
          Length = 996

 Score = 1131 bits (585), Expect = 0.0
 Identities = 591/593 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcgccagtctgacacagaggaagtcaggtgtacagggaatgaatgagaggtaatg 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ggaattcgccagtcagacacagaggaagtcaggtgtacagggaatgaatgagaggtaatg 534

                                                                       
Query: 64  aaccatgtgacaaatgtggaccagataaactggttattaagttatacaagcctaaggtat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aaccatgtgacaaatgtggaccagataaactggttattaagttatacaagcctaaggtat 474

                                                                       
Query: 124 aaggactaagctttcataaataataaaagtctccacgtcattgttagaggctgccaggtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aaggactaagctttcataaataataaaagtctccacgtcattgttagaggctgccaggtc 414

                                                                       
Query: 184 gagacaggctggagaaatattggagtcttagtcaccagactgtgacattattaggaggtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gagacaggctggagaaatattggagtcttagtcaccagactgtgacattattaggaggtg 354

                                                                       
Query: 244 gctgaacctactgaaggaagttaggccattgagaatgtgacctgctggctctctttgctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gctgaacctactgaaggaagttaggccattgagaatgtgacctgctggctctctttgctt 294

                                                                       
Query: 304 tctggctgacttggggtgggcagcttttcctataccacatgctcctactacaatatacta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tctggctgacttggggtgggcagcttttcctataccacatgctcctactacaatatacta 234

                                                                       
Query: 364 tgctgccacagacagatctaaagcaatagggccaagaaatcatggattacaacttctgaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tgctgccacagacagatctaaagcaatagggccaagaaatcatggattacaacttctgaa 174

                                                                       
Query: 424 actgttagccaaattaagccattcttctctttaatttgatttagcttaggtatttctcat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 actgttagccaaattaagccattcttctctttaatttgatttagcttaggtatttctcat 114

                                                                       
Query: 484 cgtgacagataacagactaacacacattgtgaaatgacatagtgaaaggtgattcgtcgt 543
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 cgtgacagaaaacagactaacacacattgtgaaatgacatagtgaaaggtgattcgtcgt 54

                                                                
Query: 544 tgtattaattaagtaaaattatttttagtaatattttttgtgagcgcccgact 596
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  tgtattaattaagtaaaattatttttagtaatattttttgtgagcgcccgact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no273_n06.g1 MSMg01no273_n06.g1 CHROMAT_FILE:
MSMg01no273_n06.g1 PHD_FILE: MSMg01no273_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:16 2005
         (295 letters)



>mm_chr11_48893308_48894002
          Length = 695

 Score =  540 bits (279), Expect = e-158
 Identities = 291/295 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctggttttcatgagaatgacataggtaaaggtccagacagagaattcccaaggatgat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 ttctggttttcatgagaatgacataggtaaaggtccagacagagaattcaaaaggatgat 260

                                                                       
Query: 61  tatcaatatgatcaaggaaaaaggactcagtcagataaatgacaatcaggggtcaacaaa 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 tatcaatatgatcaaggaaaaaggactcagtcagatgaatgacaatcaggggtcaacaaa 320

                                                                       
Query: 121 gggcatgataatggaagtgaataaaaagaaatactgaagaaacctgtgtcttatatgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggcatgataatggaagtgaataaaaagaaatactgaagaaacctgtgtcttatatgagg 380

                                                                       
Query: 181 ctaaaattatttttttttgtaaatcaaatgctcagtggaaaggcacattaacacaatgga 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ctaaaattatttttttttgtaaatcaaatgctcattggaaaggcacattaacacaatgga 440

                                                                  
Query: 241 tcacctgaaagagagattatctgaagttttaggtatatatagataatatagtatt 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacctgaaagagagattatctgaagttttaggtatatatagataatatagtatt 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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