BAC Information

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BAC

Clone NameMSMg01-273N23
Chromosome11 (Build37)
Map Location 114,541,838 - 114,542,153
singlet/doubletsinglet
Overlap geneTtyh2
Upstream geneD11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739, LOC634710, 4932435O22Rik, Rpl38
Downstream geneDnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273N23.T7 (MSMg01no273_n23.b1)MSMg01-273N23.TJ (MSMg01no273_n23.g1)
ACCAG412760AG412761
length725722
length of high quality
(start - end)
320 (45 - 364)293 (72 - 364)
definitionCHROMAT_FILE: MSMg01no273_n23.b1 PHD_FILE: MSMg01no273_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:19 2005CHROMAT_FILE: MSMg01no273_n23.g1 PHD_FILE: MSMg01no273_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCACATACTCCCCCAAGCAATTGCCAGAGCTTAGAAAGGCCAGTC
TCACATTACCCCTAGCCTCCTACTCCCCCACCCCACCCCTGCCTGTCCCA
GCACCATGGCCAAACTTAGCCTCTCTGACATCAAAGGTCCTTCCATTATT
TCTGGTTTATCATTTGTAGTCCGGGCCACCCTGGTACTCAGGCTAGGGGG
ACAGCAGCGGCCGCTGTAGACAGACCCCCAAGGGAGTACAGATGGCAGTT
TCAGTGGCGTGCCAGCCTCTGGCTGATTCAGGGGGACTATCCACATGCTC
TATAGGGAGAACACATTCTTGTAGCCCGCCCACCCCCTAACTCCTTGGGG
AACTGGCGTGACAGCCCGATGACCATGACTCCCAAGATCAGATGTAATGA
ACGGGCTTCCTCATCCTGACCTTGGCTCTTTTCCCACGGGGCTGAGCTCT
AAAGCCTGCTTTTTCCTCCGATCTGCCTCCAGCTGAGCATCCTGGTCTTT
TCCCAGAATTCCATACTCTGTCCTCAACGCACTCAGTTGGGTCAAAAAGA
TGGAGTCTATAGCCCACGCTGGCCTCAAACTCTTATGAAGCCAAGAGTGA
CTTTTTGTTTGTGGTTATTTCATTTTATTAATTTTTTTAATGGCAGGGTC
TCTCTATAGCCCTGGCTAGCCTGGG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCCGAATTCACTCTGTAGACCAGGCTGGCCTCGAACT
CAGAAATCCGCCTGCCTCCCAAGCGCTGGGATTAAAGGCGTACGCCACCA
CGCCTGGTCTGGTAGCTTCATTTTTTAAAGATGTATTTATTTATTTATTT
ATTTATTTTAGTATAGGAGTACGCTGTAGCTGTACAGATGTTTGTGAGCC
ATCATGTGGTTGCTGGGAGGACCTCTGTTCACTCCCGCCCTGCTCGCTCC
AGCCCAAAGATTTATTCATTACTATATGTATGTACATTGTAGCTGACTTT
AGACGCACCAGAAGTGTTTGTCACACCCCCCCATGGATGGTTGTGAGCCA
TCATGTGGTTGCTGGGATTTGAACTCAAGACTTCTGGAGGAGCAGTCAGT
GCTCTTAACTGCTGAGCCATCTCTCCAGCAGACACACATGATAGTTTCAG
AAGATCTAATACCCTCTTCTGACCTCTGCAGGCACAAAGCACACATGGTG
GCACATGCCTGCATGCAGANCAAAAAATCCACACATAAAATAAGGTGAAT
AAGTCTAATTTAAAAAAAAAATCATATGGCATACTTTCTTGTAGAGATGG
GACCCGTACAAAAGATGACTCGATTCAAAGAGGGATATCCACCTGGCTCG
GGACTGGCACAGCCTCTCTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_n23.b1 MSMg01no273_n23.b1 CHROMAT_FILE:
MSMg01no273_n23.b1 PHD_FILE: MSMg01no273_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:19 2005
         (320 letters)



>mm_chr11_114541634_114542353
          Length = 720

 Score =  557 bits (288), Expect = e-163
 Identities = 309/316 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgcacatactcccccaagcaattgccagagcttagaaaggccagtctcacatta 64
           ||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 520 gaattctgctcatacaccctcaagcaattgccagagcttagaaaggccagtctcacatca 461

                                                                       
Query: 65  cccctagcctcctactcccccaccccacccctgcctgtcccagcaccatggccaaactta 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cccctagcctcctactgccccaccccacccctgcctgtcccagcaccatggccaaactta 401

                                                                       
Query: 125 gcctctctgacatcaaaggtccttccattatttctggtttatcatttgtagtccgggcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gcctctctgacatcaaaggtccttccattatttctggtttatcatttgtagtccgggcca 341

                                                                       
Query: 185 ccctggtactcaggctagggggacagcagcggccgctgtagacagacccccaagggagta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ccctggtactcaggctagggggacagcagcggccgctgtagacagacccccaagggagta 281

                                                                       
Query: 245 cagatggcagtttcagtggcgtgccagcctctggctgattcagggggactatccacatgc 304
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 280 cagatggcagtttcagtggcgtgccagcctctggctgaagcagggggactatccacatgc 221

                           
Query: 305 tctatagggagaacac 320
           ||||||||||||||||
Sbjct: 220 tctatagggagaacac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)