BAC Information

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BAC

Clone NameMSMg01-274A18
Chromosome11 (Build37)
Map Location 72,451,064 - 72,601,793
singlet/doubletdoublet
Overlap geneUbe2g1, Ankfy1, Cyb5d2
Upstream geneWscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577
Downstream geneZzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274A18.T7 (MSMg01no274_a18.b1)MSMg01-274A18.TJ (MSMg01no274_a18.g1)
ACCAG412886AG412887
length744750
length of high quality
(start - end)		331 (369 - 699)283 (69 - 351)
definitionCHROMAT_FILE: MSMg01no274_a18.b1 PHD_FILE: MSMg01no274_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:32 2005CHROMAT_FILE: MSMg01no274_a18.g1 PHD_FILE: MSMg01no274_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,601,463 - 72,601,793)(72,451,064 - 72,451,345)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATG
TATCCCAGAGCGGTCTCAAACTCACTATGTAGATCGGGCTAGCCTTGAAT
TCCTGATCCTACTGCCTCCATCTCCTGAGTGATCAAACATATATTGATGC
CAGCTGTGTTAATATGTGTTAATATGTGTTAATATGTGGGGTCCTACACC
CACTACTTACTGTGATAAAAGAGAGAAAGCAACTCTTAAATGGGGAGACA
GCCTTACAGTGATCACTACAGTCTTTTTCTTTTTTTCAAGACAGGGTTTC
TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTATAGACCAGGCTGTCT
TTTTATTCACACCCCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG
GCGTGTGCCACCACTGCCCAACTGGTCACTACAGTCTTTCCTAAGCTCTG
ACTGCTAGCTAGGATGGCTAAGGCCAGTCCTTTCATCGGTGTGCAGCCCC
ACAATGAAGCCCCACATGGGCATGTCTGAGTTCTTTCAGATACCAATGTC
CCCTTGCGGTTGGAATAAGTCTAGATTAGCATTTTCTGCCCCTAATGCCT
CTGAGTGCTTGCTTTCATTACTGTTTGCCCTTCTAATTCTGAGAACCCTG
GCATGTTCCCTAACTCTTGTACTGCATGTCCAGTCGTTAAAGCAGTGATT
TCCTAAGTGCTGAAGTGAGTGCCTTTCCCACCTGCCCCTCAGTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTTTGCCAACACCCTCATGAGATGGCTTAAA
ACTGTCTGTATGTCCAGATTGAGGGGATTTGGTACCTTCTTCTAGATTCT
CTGGGGACTTGTACACTCATTGCCCCATTCCCATAATTAAACACCATAAA
AATAAGTTTTTAGGAGACTGGAGAGATGGCTTAGTTGTTCAGAGCACTGA
CTATGACCTAGCCTCATTCCCAGTACCACCTATAGGACAGCTCACAACTG
TCTGTAAGTCTGGTCCCAGGGGATCTGACACCCTTTTATGGTCTCCTCTG
TCATCATTACCCGCCCGCCCCCACCTCCGACATACATGCAGGCAAAACAC
TCTTAGACATAAAATAAAAATAATAAATGTCTTTTTAAAAATGCAGAAAA
TTAAACTAAGTATCAGTTTAGTGTATGACCTCAGAACATATTGTAGAGAG
ATAGTGGTTAATGGAGGATCAGATCTTAGTGAGTTTCTATTGGGTTATGG
GAAAGCAGTGACAGGTGTGAGGTAGATTTGTATAGAAGGTCTAGGGTCAA
ACACTCTTTTAGGGACATGAGGAAGTTGGAAACTTAAAGAGGACGATTAG
AGAAGAATTGGATTTGAATCAAAGGCCAATAACTTAAAAGTACTTAAATT
GGTTTGAAATGCTATTTGACGGACCAATGTATCAGTAGATAAAGGTACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_a18.b1 MSMg01no274_a18.b1 CHROMAT_FILE:
MSMg01no274_a18.b1 PHD_FILE: MSMg01no274_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:32 2005
         (331 letters)



>mm_chr11_72601208_72601938
          Length = 731

 Score =  617 bits (319), Expect = 0.0
 Identities = 328/331 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcctctgcctcccaagtgctgggattaaaggcgtgtgccaccactgcccaactggtca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 586 ctgcctctgcctcccaagtgctgggattaaaggcgtgtgccaccactgcccagctggtca 527

                                                                       
Query: 61  ctacagtctttcctaagctctgactgctagctaggatggctaaggccagtcctttcatcg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 526 ctacagtctttcctaagctctgactgctagctaggatggctgaggccagtcctttcatcg 467

                                                                       
Query: 121 gtgtgcagccccacaatgaagccccacatgggcatgtctgagttctttcagataccaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gtgtgcagccccacaatgaagccccacatgggcatgtctgagttctttcagataccaatg 407

                                                                       
Query: 181 tccccttgcggttggaataagtctagattagcattttctgcccctaatgcctctgagtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tccccttgcggttggaataagtctagattagcattttctgcccctaatgcctctgagtgc 347

                                                                       
Query: 241 ttgctttcattactgtttgcccttctaattctgagaaccctggcatgttccctaactctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ttgctttcattactgtttgcccttctaattctgagaaccctggcatgttccctaactctt 287

                                          
Query: 301 gtactgcatgtccagtcgttaaagcagtgat 331
            ||||||||||||||||||||||||||||||
Sbjct: 286 ctactgcatgtccagtcgttaaagcagtgat 256


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no274_a18.g1 MSMg01no274_a18.g1 CHROMAT_FILE:
MSMg01no274_a18.g1 PHD_FILE: MSMg01no274_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:32 2005
         (283 letters)



>mm_chr11_72450864_72451546
          Length = 683

 Score =  538 bits (278), Expect = e-157
 Identities = 281/282 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttgccaacaccctcatgagatggcttaaaactgtctgtatgtccagattgaggggat 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 agtttgccaacaccctcatgagatggcttaaaactgtctgtatgtctagattgaggggat 260

                                                                       
Query: 61  ttggtaccttcttctagattctctggggacttgtacactcattgccccattcccataatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggtaccttcttctagattctctggggacttgtacactcattgccccattcccataatt 320

                                                                       
Query: 121 aaacaccataaaaataagtttttaggagactggagagatggcttagttgttcagagcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacaccataaaaataagtttttaggagactggagagatggcttagttgttcagagcact 380

                                                                       
Query: 181 gactatgacctagcctcattcccagtaccacctataggacagctcacaactgtctgtaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactatgacctagcctcattcccagtaccacctataggacagctcacaactgtctgtaag 440

                                                     
Query: 241 tctggtcccaggggatctgacacccttttatggtctcctctg 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctggtcccaggggatctgacacccttttatggtctcctctg 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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