BAC Information

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BAC

Clone NameMSMg01-274H20
Chromosome11 (Build37)
Map Location 14,484,285 - 14,484,570
singlet/doubletsinglet
Overlap gene1700046C09Rik
Upstream geneLOC432535
Downstream gene1700054H16Rik, LOC100042542, LOC100041673, LOC432537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274H20.T7 (MSMg01no274_h20.b1)MSMg01-274H20.TJ (MSMg01no274_h20.g1)
ACCAG413200AG413201
length737733
length of high quality
(start - end)
314 (381 - 694)290 (68 - 357)
definitionCHROMAT_FILE: MSMg01no274_h20.b1 PHD_FILE: MSMg01no274_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:02 2005CHROMAT_FILE: MSMg01no274_h20.g1 PHD_FILE: MSMg01no274_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGACCGCGGAATTCCA
ACCCCTAACACACAAAACCATAAAAACCCCTAGCTTTTGAGCCTGGTGGC
CGACATCTGTTATCTCCTGTGTGGGATACATGTCGGTCCGGAGCTCCGTA
ATTAAACGTCCTCATGTAATTACAGCAAGTTGGGTCCTCGTGTTTCTTTG
GGTGCTCTCACACTCCCAAGACTAGAGTAGGGGTCCCCGAAAGAAGGTCT
TACAGTACAACTACTTTCGAAAACATTCTGATGGTTCCTCAGAAAATTGG
ACTTACTGCTACCTGTTTTTACCCAGCAATACCACTCCTGGGCATGTGCC
CAGAATATTTTTTTTACACACACTACCCACACATGCTCCACTATATTCAT
CGCAGCCTTATTTATAATAGCCAGAAAATGGAAAGAGCCCAGATGTCCCT
CAACAGAGTAATGGATACAGAAAACGAGGTACATTTACAAAATGGAGCAT
TACTCAGCTATTAAAAACAATGAATTTATGATATTCTCAGGCAAATGGAT
GGATATGGAGGATATCATCTTGACTCAGGTAACCCAATAAAAAAATAACA
CATGTCATGCACGCACTGATAAGTGGATATTAGAACAGAAGCTCAGAATA
CCCAAAATACAATTCACAAACCACATGAAACTCAAGAATAAGGAAGACCA
TAGTGTGGATACTTCCATTCATCTTAGAATGCGGGAA
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTGGCTTGGGGACTGGGAAGGGGGCAACATTTG
GAATGTAAATAAATAACAGAATTTTTTTAAAATGGAAATACAACAATGAG
ACCCTCAGTTTAATCTCTGTAACCACATGAATAAAGGAATAGAGTAAATA
TTCAAGGTGAAATTAAAATAAGAGACCTGTGTTAAAAGGCAGGGATTTTC
TAGAGACTGAGAGGAAAAGTAAGAGCTAGAGATGTAATACTGACCATAAA
CCTTGACAAAGAGCTGTATCCAAAATTTATGAATGTACAAAAGATGTAAG
GAGACTTTNCTGCTACCCGGAGCAAAACATAAAGGTCATGGTTAAAACAG
TGTCTCACACTGGAAACTCATAAACAAAAATGTANGACCGTAATACAACA
TCAATTAAGCCAGAAAAGAAATATATAATGTTTGGGAATACAATGTTTTG
AGAACTGGAATCGAATCCTCTGTTTACTTTTTACTTAGAGAAACAGAGTC
TCACTGTAAGGATCTAATCTGACTTTGGATTCAGTCAGTAGCTTATGCTG
GGCTTAAACTTCCACTCCTACAGCCTGTTTTTCCAATTGGTAGGATTACA
ACCTAATTTAAGGAAAAAAATGTCTGTGGGAACACAATGCATATTTCCAT
TTTTATGTCAACACCCCACATTAAAAAACCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_h20.g1 MSMg01no274_h20.g1 CHROMAT_FILE:
MSMg01no274_h20.g1 PHD_FILE: MSMg01no274_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:02 2005
         (290 letters)



>mm_chr11_14484084_14484772
          Length = 689

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%), Gaps = 2/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggcttggggactgggaagggggcaacatttggaatgtaaataaataacagaatttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 202 ttggcttggggactgggaagggggcaacatttggaatgtaaataaataagagaatttttt 261

                                                                       
Query: 61  taaaatggaaatacaacaatgagaccctcagtttaatctctgtaaccacatgaataaagg 120
           |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taaa-tggaaatacaa-aatgagaccctcagtttaatctctgtaaccacatgaataaagg 319

                                                                       
Query: 121 aatagagtaaatattcaaggtgaaattaaaataagagacctgtgttaaaaggcagggatt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 320 aatagagtaaatattcaaggtgaaattaaaataagagacctgtgttaaaaggcaggaatt 379

                                                                       
Query: 181 ttctagagactgagaggaaaagtaagagctagagatgtaatactgaccataaaccttgac 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttctagagactgagatgaaaagtaagagctagagatgtaatactgaccataaaccttgac 439

                                                           
Query: 241 aaagagctgtatccaaaatttatgaatgtacaaaagatgtaaggagac 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaagagctgtatccaaaatttatgaatgtacaaaagatgtaaggagac 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space:   191080
Effective search space used:   191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)