Query= MSMg01no275_b03.b1 MSMg01no275_b03.b1 CHROMAT_FILE:
MSMg01no275_b03.b1 PHD_FILE: MSMg01no275_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:44 2005
(406 letters)
>mm_chr11_42159698_42160501
Length = 804
Score = 698 bits (361), Expect = 0.0
Identities = 392/403 (97%), Gaps = 4/403 (0%)
Strand = Plus / Minus
Query: 5 gaattcagttttc-tttcttctataatgaataatttaactacacaaaattgtaacacaat 63
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gaattcagttttcattt-ttctataatgaataatttaactacacaaaattgtaacacaat 546
Query: 64 ttagacaacttagacccgcagatttagcagatatctataaacaccatgtccaaaacaata 123
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 545 ttagacaacttagacaagcagatttagcagatatctataaacaccatgttcaaaacaata 486
Query: 124 aaatgtattcatttaaagtatatatgacttctacaagagattatgatttaataaatctca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaatgtattcatttaaagtatatatgacttctacaagagattatgatttaataaatctca 426
Query: 184 agaaataaaaggttttcaagaccaaagtaatactatgttattcaacaaaaacaatgcaaa 243
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agaaataaaaggtgttcaagaccaaagtaatactatgttattcaacaaaaacaatgcaaa 366
Query: 244 tgtatattatgaaccataggaattaacatatggtaggcaaatgttacacacctgaatgac 303
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tatatattatgaaccataggaattaacatatggtaggcaaatgttacacacctgaatgac 306
Query: 304 aagagttattgtagtaataacaaagaacaatttaagagcatgttaagattatcagagaga 363
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 305 aagagttattgtaggaataacaaagaaaaatttaagagcatgttaagattatcagagaga 246
Query: 364 aaaataaaatatagctagatggggggggtgtagctgatacaga 406
|||||||||||||||||||| |||||||||||||||||||||
Sbjct: 245 aaaataaaatatagctagat--ggggggtgtagctgatacaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 804
Length adjustment: 9
Effective length of query: 397
Effective length of database: 795
Effective search space: 315615
Effective search space used: 315615
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no275_b03.g1 MSMg01no275_b03.g1 CHROMAT_FILE:
MSMg01no275_b03.g1 PHD_FILE: MSMg01no275_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:44 2005
(244 letters)
>mm_chr11_42026598_42027240
Length = 643
Score = 412 bits (213), Expect = e-119
Identities = 234/241 (97%), Gaps = 3/241 (1%)
Strand = Plus / Plus
Query: 5 acgttgtctggtttgcctagtgttctattcttgctcta-cgttctcttttcactgtgccc 63
|||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||
Sbjct: 205 acgttgtctggtttgcctagtgttctattcttgctc-agcgttct-ttttcactgtgccc 262
Query: 64 aatctctctccatgctgacatttccccactatttctcaaataacccgtgttctttcttag 123
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aatctctctccaagctgacatttccccactatttctcaaataacccgtgttctttcttag 322
Query: 124 catgtgtgcatttgaacacatggattctactgactatcctgctacagtggccactttata 183
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 323 catgtgtgcatttgaacacatggattctactgactatcctggtacagtggccactttata 382
Query: 184 ttttaatgctgtagattaaatgctgcccagaccaagaagaggaagaaaaaaggaagagga 243
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 383 ttttaatgttgtagattaaatgctgctcagaccaagaagaggaagaaaaaaggaagagga 442
Query: 244 g 244
|
Sbjct: 443 g 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space: 148990
Effective search space used: 148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
