BAC Information

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BAC

Clone NameMSMg01-275E15
Chromosome11 (Build37)
Map Location 50,714,513 - 50,858,081
singlet/doubletdoublet
Overlap geneZfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54
Upstream geneRasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454
Downstream geneOlfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275E15.T7 (MSMg01no275_e15.b1)MSMg01-275E15.TJ (MSMg01no275_e15.g1)
ACCAG413784AG413785
length750751
length of high quality
(start - end)		576 (68 - 643)234 (124 - 357)
definitionCHROMAT_FILE: MSMg01no275_e15.b1 PHD_FILE: MSMg01no275_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:00 2005CHROMAT_FILE: MSMg01no275_e15.g1 PHD_FILE: MSMg01no275_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(50,714,513 - 50,715,088)(50,857,848 - 50,858,081)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAATTACATGGCCTCACAGGAATGCTTTGTGGTGTATTAAGCATTGATCC
CTCAGTGGAAGAGTTCTCACCTGTATTACCTCCACACACACTCTTCTCAT
TATAGATTTCCTTTTGGGCCACTGTCACTTGGCCCAGGTATGTCTCCTGT
TGCCCCTTTAACCAACAGGTAGGATCCCAGACAGCCCCCAAAGCTGAATG
CCAGAGATCTTCCCTGTCCATTATGACCCCATAGGGCAAAATTCCAGTAA
TGGTGGACTTTGGAGTTGACTCTCTTGTTTCAAGTTTTGTCTCGCAGCCT
GAAAAAGGAAAGAAATTCAGATGCATATTGATTCCTGTGTTAAGTGACTA
GAAGCCACATGAGGTGGAGGGCCTAAGAGAATAAAGGTAGAATAACTGTT
ACCTGCACTGAAGAGATTTTGAACAAAGGTCTTCAATTCCTAGAGAAATC
TAAAAGTGAAGAACAATGTAGCAGTCCACAAAAGCGGAAGAACCAAGACA
ATGGCAGATCCACTGCAGAAGTGGAGAGAAGGGGACACCTCATCCAGGAG
GGACGGATCAATTGTTACTGTAGAACTCGGGGACAATACCCAGAAGAGAC
TGGCGAGGGATAGCGTTTGAGGATGGCGTGCTCTATTTGACGATTACTTA
ATCCACAGAATTCAGAATCACCTGTCAAGGCCATACCTATTACGATTACC


CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTAGAGAACACCTTTAACTTTTTTTCAGGT
TCAAAGTGAAATGTTATATACGAGGAGTTCTTGTACTGTTGTTCACTCAG
GCATTGAGCAAGTACACATGAAGTGTGCTGTAATTTCCCCGTCAGACCAC
CAAACTATCAGGACTAAACCCTGCCTTCTGGTAATACCGTTGTGTTCCAG
AAAGCTCCAAAGAGACTCCAAACTGACAAGTTCCAAGGAGAGGAGGATGG
GAGGGGCTGCAGCTCAGTATATCATTAGCCTAGCATCCATGAGATTCTGG
ATTCGTCCCTATTATTTCACACCCCCCCACTGGTGGTGCATACCTGTGAT
TTCAGCACTCTGGAAGTAGAGGCAGGAAAAACAGGAAATCAAGGTCATTC
TTGATCATATAATTGGAGACCAGCTTGGGGATATATGACCCCCTGTCTCA
AAAGTGAATTCATGCATACACATACACACAGTTACGAAGAAGGAAGGAAG
AAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAGTTTTNNTTTTTTTTNTTT
TTNTTTTTTTTTNNNTTTTTTTTTTTTGTTTGTTTNTTTGTTNGCGTTTT
TTTTTGTTTTTCTTCTTTTTTTTCTTCCCCTTGTTGTCTCTTCTTTCCCT
TTTTCCTTTTCCCTTTATCCTCCTTTTTCTTCTTTCACCCCCCTTCCTCA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_e15.b1 MSMg01no275_e15.b1 CHROMAT_FILE:
MSMg01no275_e15.b1 PHD_FILE: MSMg01no275_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:00 2005
         (576 letters)



>mm_chr11_50714313_50715288
          Length = 976

 Score = 1052 bits (544), Expect = 0.0
 Identities = 568/576 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaatgctttgtggtgtattaagcattgatccctcagtggaagagttctcacctgtatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 201 aggaatgctttgtggtgtattaagcattgatccctcagtggaagagttctcagttgtatt 260

                                                                       
Query: 61  acctccacacacactcttctcattatagatttccttttgggccactgtcacttggcccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctccacacacactcttctcattatagatttccttttgggccactgtcacttggcccag 320

                                                                       
Query: 121 gtatgtctcctgttgcccctttaaccaacaggtaggatcccagacagcccccaaagctga 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatctctcctgttgcccctttaaccaacaggtaggatcccagacagcccccaaagctga 380

                                                                       
Query: 181 atgccagagatcttccctgtccattatgaccccatagggcaaaattccagtaatggtgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgccagagatcttccctgtccattatgaccccatagggcaaaattccagtaatggtgga 440

                                                                       
Query: 241 ctttggagttgactctcttgtttcaagttttgtctcgcagcctgaaaaaggaaagaaatt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 ctttggagttgactctcttgtttcaagttttgtctcgcagcctgaaaaaggaaacaaatt 500

                                                                       
Query: 301 cagatgcatattgattcctgtgttaagtgactagaagccacatgaggtggagggcctaag 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagatgcatattgattcctgtgctaagtgactagaagccacatgaggtggagggcctaag 560

                                                                       
Query: 361 agaataaaggtagaataactgttacctgcactgaagagattttgaacaaaggtcttcaat 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 561 agaataaaggtagaataactgttacctgcactgaagagattttgaccaaagatcttcaat 620

                                                                       
Query: 421 tcctagagaaatctaaaagtgaagaacaatgtagcagtccacaaaagcggaagaaccaag 480
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctagagaagtctaaaagtgaagaacaatgtagcagtccacaaaagcggaagaaccaag 680

                                                                       
Query: 481 acaatggcagatccactgcagaagtggagagaaggggacacctcatccaggagggacgga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaatggcagatccactgcagaagtggagagaaggggacacctcatccaggagggacgga 740

                                               
Query: 541 tcaattgttactgtagaactcggggacaatacccag 576
           ||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaattgttactgtagaactcggggacaatacccag 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no275_e15.g1 MSMg01no275_e15.g1 CHROMAT_FILE:
MSMg01no275_e15.g1 PHD_FILE: MSMg01no275_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:00 2005
         (234 letters)



>mm_chr11_50857648_50858281
          Length = 634

 Score =  391 bits (202), Expect = e-113
 Identities = 226/234 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagttcttgtactgttgttcactcaggcattgagcaagtacacatgaagtgtgctgtaa 60
           |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 434 ggagttcttgtactgttgctcactcaggcattgagcaggtacacatgaagtgtgctgtaa 375

                                                                       
Query: 61  tttccccgtcagaccaccaaactatcaggactaaaccctgccttctggtaataccgttgt 120
           |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 374 tttccctgtcagaccaccaaactatcaggactaaaccctgccttctggtaattccgtttt 315

                                                                       
Query: 121 gttccagaaagctccaaagagactccaaactgacaagttccaaggagaggaggatgggag 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gtttcagaaagctccaaagagactccaaactgacaagttccaaggagaggaggatgggag 255

                                                                 
Query: 181 gggctgcagctcagtatatcattagcctagcatccatgagattctggattcgtc 234
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 254 gggctgcagctcagtagagcattagcctagcatccatgagattctggattcgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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