BAC Information

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BAC

Clone NameMSMg01-275E16
Chromosome11 (Build37)
Map Location 8,214,466 - 8,214,752
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC665380, Tns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275E16.T7 (MSMg01no275_e16.b1)MSMg01-275E16.TJ (MSMg01no275_e16.g1)
ACCAG413786AG413787
length751752
length of high quality
(start - end)
371 (381 - 751)289 (69 - 357)
definitionCHROMAT_FILE: MSMg01no275_e16.b1 PHD_FILE: MSMg01no275_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:00 2005CHROMAT_FILE: MSMg01no275_e16.g1 PHD_FILE: MSMg01no275_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ACTCCAGTCTCAGATTTGTAGCTTCAAAAACGGGAAAAACACGCCCCCTG
GAGCTGCCTCAAACTTCTGAAGTAAAACACCCAATGATCAATCCTCCCCC
ACCAGTTCTAAGACCTGTTTATATTCAAGGAAAGAGCAATTCTGCCTCTT
AGCAAAGGGAATCTAGCCAACCTGAGCATGGCAAATATGGCTCTGGCAGG
CCTTGCCATACTCCCCCTGCCTTGTTAAAAGCCATTAGATTACATTCCTG
AAGCTAGCCACCAAGGTCTAGTCCCTTATTTGGCCACTTCCTCCTTCTGA
GGCTCATTATTTTGTTCACACACTCCCCCAATTGAAGTCCAGCAGTCAAA
AATCTCCTTGGTTCACCTAATTGACACACCCAGTTCAAATTAAACACCTC
ATCCTAACACAGGGTTTTCCCTTTTCCCTTTATAAACTGCCATTTGCCTA
TGGACCACAGCTTTCTCATCTCTTTTCAGAGGCAGTCCTTTGTCTGGCTT
CAAGGCAAATACTCCTCTTTCTCTTCCTTGTTCCCCCATTCTCACTCCTG
TCTTCCTTATCCTCTATCTCCTGTCTTTACCTCTAATTCCCTTTCCTTTG
TCCCTCTGGGGCAAATAAATCTCCTTAGTGTTGAAACCTGGTCTTAGAGT
GTTCTGAGCTGACACCAGGCCCTACACGTGGTGCATTANACACTAGGTTT
N
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTATCTTCCTCTATCCCCTATATTTGGAGAC
AGGGTATTTGCATCTGTGGCTATTTTCATCTTAAGTGATCTCTTATATAC
ATTTTTGTTATACAGAATACGTTGCCTTTAATGAATCTTGAATGAAAGAT
TTACAACAAGGTGGCATGATGTAAGATCAATATGCAAATGATATAAGGTC
AATATGCAAATAATATAAGGGAAATATACAAAATAAATCACATATATGTA
CCAAGAATAAACAAGCAGAATTTGAAACAGCAACACTACCACCACCAACA
ACAAATTTTTTCTTAGTCCCCGCCCCCCCCAACCATATATTTCTAAGTAA
CATGAGCCAAAGAGAAAAGCTAATAAAAATAAATAATAAGCTAATAAAAA
TTAAACTTATTCAGAGGACGTAAAGAAGTACTATCCAAAAAACAAACAAA
CAAACAAACAAATAAATAAAAAGAAGTACTATCCCTAATATTAAACTGTA
CCAGAGAGAAGTAGTAATAAAAATTTCATGGTATTGGTATAGAAAGTGAC
AGGTTGATCAATGAAATAGAATCAAAGACCCTGAAATAAGCACACACACA
CACACACACACACTTACACACTCACACACACACACACTTATGGACACCTG
ACTTTTGACAAAGAAAGCAAAACCATACAATGAAAGAAGGAAGCATCTTC
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_e16.g1 MSMg01no275_e16.g1 CHROMAT_FILE:
MSMg01no275_e16.g1 PHD_FILE: MSMg01no275_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:00 2005
         (289 letters)



>mm_chr11_8214266_8214954
          Length = 689

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatcttcctctatcccctatatttggagacagggtatttgcatctgtggctattttca 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tctatcttcctctatcccccatatttggagacagggtatttgcatctgtggctattttca 428

                                                                       
Query: 61  tcttaagtgatctcttatatacatttttgttatacagaatacgttgcctttaatgaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tcttaagtgatctcttatatacatttttgttatacagaatacgttgcctttaatgaatct 368

                                                                       
Query: 121 tgaatgaaagatttacaacaaggtggcatgatgtaagatcaatatgcaaatgatataagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgaatgaaagatttacaacaaggtggcatgatgtaagatcaatatgcaaatgatataagg 308

                                                                       
Query: 181 tcaatatgcaaataatataagggaaatatacaaaataaatcacatatatgtaccaagaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tcaatatgcaaataatataagggaaatatacaaaataaatcacatatatgtaccaagaat 248

                                                          
Query: 241 aaacaagcagaatttgaaacagcaacactaccaccaccaacaacaaa 287
           |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 247 aaacaagcagaatttgaaacagcaacaccaccaccaccaacaacaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)