BAC Information

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BAC

Clone NameMSMg01-275H10
Chromosome11 (Build37)
Map Location 85,241,119 - 85,395,781
singlet/doubletdoublet
Overlap geneBcas3
Upstream geneAatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream geneTbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275H10.T7 (MSMg01no275_h10.b1)MSMg01-275H10.TJ (MSMg01no275_h10.g1)
ACCAG413910AG413911
length760766
length of high quality
(start - end)
312 (42 - 353)285 (72 - 356)
definitionCHROMAT_FILE: MSMg01no275_h10.b1 PHD_FILE: MSMg01no275_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:12 2005CHROMAT_FILE: MSMg01no275_h10.g1 PHD_FILE: MSMg01no275_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,241,119 - 85,241,424)(85,395,497 - 85,395,781)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTGTTGCCAATGCCTTTTCTGTATATTGATGTAGTTATCTGATTTTGG
GTTGGGATAAAAGCTTCCCGGGGGTGGAGCTTGTTCACCTCTGCTGTTTT
TGTTCTGTTTTGCCAGTCCTAGTGGGCTACGCTAGGACTGCTTTTTAGGG
ATCTTTACTTCCACGGAAAAATTGTAATTTGTTTATATTCCCTACAGAAG
CTCATGTGTATAATGCTGTACATATATCTTTATTGAGGCATAATTGAAAC
ATGATTAACTGCACCTCCTTAATGTGTGCAGTTTGATACATTTTGACATC
TGTANATCNTTGTGCCCCCATCCCTCCAATCAAGATAATGAGCATGGCCA
CCCCCACATTAGTTTTCTCATGACAAGCTGTAATGCATCCTTGTGTGTCC
CTCCCCTTGGCGGAAGAAGCTTGCTTCAAGATAGTAAGGCTCAGGGTAGC
ACTTCAATCTTGACTCGGTGATAAACTTTAAGAAAGTTTCTTTGCTGTTG
TCTAGTTTAAGGTACCTTCAATGGGTAGTTAGAAATATAACAGTAAGCAT
CTCTGTGTTCCACGTTTCCCTTCCGCTCCATAACCTCAAGGCTTTTAACA
GCATACCTTTCCTTTTTAAAACAGTTCATAAATCTACTAAAGGGTTTGCG
TTTCCACTGTGGTATCTTTTCAAAACACCAGTTTTTTTTCCGCCTCCTTA
AGGATGTTTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAGATAACCTGGGCTACAGAATCAGTCT
CTAAACAAACAGGCACATCCCAATTTTAAAATTAAGAAGACACCCTGGAT
TCTGACTTCAGCAGCAGCTCTGAGTGGTTAGTGAAGGCAAGACAGCCGGG
GAATGAGAGAAAGAGCTAATGCTCAGACATTTAAGTGGCCAATGCTCTGG
AGACCACCAGAAGGAAAGTCAGGAGGGCTTTTATGTCTCCACCCCTCTAG
ACATGGATCCCATTTATATTTTTGAGAGTCTAATTTAATTTAGCCTGGCA
ACAATTTTTTTNGTTCCGCTTCTAGCCCGGGTCTCTAGCACAAAGTCCTG
CTAGCATCAAACTCACAGAGATAAAAAAGACTCAGTTCCCCGTGTTTGAA
TTGAAGCTATGTGCCATCACAGCTAGCTTAGCTTTATTATTTTTAAAAGC
TGTGACTGCTGTTGACAAAGATAAAGCCATTTTGTCATGTGGCTGGAATA
TAATTTCCTATAATTTCATTGTAAAAGATACACAAGGAAGGTCAGAAGGC
TATTTTAAAGCAAACTCTCGATGTGTAACAGGTATTTTTAAATTGTGCAC
AGGATGTTCTTATGCCTTGTTCTCACAACCACCCGTCCGGACTGCTGAGA
CTAAAGATGTGGGTAACCTACCCCAAGTCAAAGCTTATTAACTGTATGGG
TACTCTTGGCGACCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_h10.b1 MSMg01no275_h10.b1 CHROMAT_FILE:
MSMg01no275_h10.b1 PHD_FILE: MSMg01no275_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:12 2005
         (312 letters)



>mm_chr11_85240913_85241624
          Length = 712

 Score =  538 bits (278), Expect = e-157
 Identities = 299/306 (97%)
 Strand = Plus / Plus

                                                                       
Query: 7   attcactgttgccaatgccttttctgtatattgatgtagttatctgattttgggttggga 66
           |||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 207 attcactgttgggaatgccttttctgtatattgatgtagttatctgattttgagttggga 266

                                                                       
Query: 67  taaaagcttcccgggggtggagcttgttcacctctgctgtttttgttctgttttgccagt 126
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 taaaagcttttggggggtggagcttgttcacctctgctgtttttgttctgttttgccagt 326

                                                                       
Query: 127 cctagtgggctacgctaggactgctttttagggatctttacttccacggaaaaattgtaa 186
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cctcgtgggctacgctaggactgctttttagggatctttacttccacggaaaaattgtaa 386

                                                                       
Query: 187 tttgtttatattccctacagaagctcatgtgtataatgctgtacatatatctttattgag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tttgtttatattccctacagaagctcatgtgtataatgctgtacatatatctttattgag 446

                                                                       
Query: 247 gcataattgaaacatgattaactgcacctccttaatgtgtgcagtttgatacattttgac 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcataattgaaacatgattaactgcacctccttaatgtgtgcagtttgatacattttgac 506

                 
Query: 307 atctgt 312
           ||||||
Sbjct: 507 atctgt 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no275_h10.g1 MSMg01no275_h10.g1 CHROMAT_FILE:
MSMg01no275_h10.g1 PHD_FILE: MSMg01no275_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:12 2005
         (285 letters)



>mm_chr11_85395297_85395981
          Length = 685

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagataacctgggctacagaatcagtctctaaacaaacaggcacatcccaattttaaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 485 caagataacctgggctacagaatcagtctctaaacaaacaggcacataaaaattttaaaa 426

                                                                       
Query: 61  ttaagaagacaccctggattctgacttcagcagcagctctgagtggttagtgaaggcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttaagaagacaccctggattctgacttcagcagcagctctgagtggttagtgaaggcaag 366

                                                                       
Query: 121 acagccggggaatgagagaaagagctaatgctcagacatttaagtggccaatgctctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 acagccggggaatgagagaaagagctaatgctcagacatttaagtggccaatgctctgga 306

                                                                       
Query: 181 gaccaccagaaggaaagtcaggagggcttttatgtctccacccctctagacatggatccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gaccaccagaaggaaagtcaggagggcttttatgtctccacccctctagacatggatccc 246

                                                        
Query: 241 atttatatttttgagagtctaatttaatttagcctggcaacaatt 285
           ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atttaaatttttgagagtctaatttaatttagcctggcaacaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)