BAC Information

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BAC

Clone NameMSMg01-276G10
Chromosome11 (Build37)
Map Location 28,747,347 - 28,747,697
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626571, Ccdc85a
Downstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276G10.T7 (MSMg01no276_g10.b1)MSMg01-276G10.TJ (MSMg01no276_g10.g1)
ACCAG414598AG414599
length736737
length of high quality
(start - end)
229 (128 - 356)354 (384 - 737)
definitionCHROMAT_FILE: MSMg01no276_g10.b1 PHD_FILE: MSMg01no276_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:20 2005CHROMAT_FILE: MSMg01no276_g10.g1 PHD_FILE: MSMg01no276_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACTGAGGAATAGCAAATAGCTGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCACGCAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCATATCAGTCAGAATTGCTAAAATCAAAAATTCAGGTGACAGCA
AATGCTGGGAAGGATGTGTTGAAAGAGGAACACTCCTCCATTGCTGGTGG
GATTGCAAGCTGGTACAACCACTCTGGAAATCAGTTTGGTGGTTCCTCAG
AAAATTAGACATAGTACTACCAGAGGATTCAGCAATACATCTTCTGGGAA
TATACCTTTATTTATGTTCCCACTGCCCCTAAGGACACATGCTCCACTAT
GTTCATAGTAGCCTTATTTATAATAGACAGAAGCTGGAAAGAACCTAGAA
GGTCAACAGAAGAATGGATACAGAAAATGTAATGCATTTACACAGTGGAG
TACTACTCAGCTATTAAAAACAATGAATTCATGAAATTCTTAGGAAAATG
GATGGATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGA
GCACACATGATATACACTCACTGATTATGGGATATTAGCCCAGAAATTTA
GAATGCCCAAGATACAATTTGCAAAACACATGAGACTCAAGACAAAGAAA
GAACAAAGTGTGGATACTTCCATTCTTCTTACAAGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAATTTCAGAGGAGTGTTAGATA
TTGAAGACCATGAGATTCCCCCTTGCCTGAAGACTCTAATTTTTGAAGCA
TGTATCTAGATCAAATTTTCCTTGTAAGTATGCCTTATTTCTAAGAAAGG
TTCATAGCTAATTGAGTACAATAAGGAATCTCAGTGGTTATCTCTACATT
CTTAGAGACCAAGACATAAATCATTAAATTATCTGACAGTTATGGCCATG
TAGCCAAATCAGGCAATGTTAATATCTTCTCATTTTGTAAAAGTATGTGT
ACAGAATATTTTACTTTTACTCCCCCCACCCTTGGATGAATTAACTGATT
AATATTACAGAATAATTTATTGTTATGAAGAAATATTCTTAGTAGATTGA
TAAAAATTGATCACCTCCAAGAAAAATGATGATCAAGTTAATTATTTTCC
TTGGTCTTTCTCCATATTGATGCTTTAAAAATTCAATATTTTTGAATAGC
TAAGTTGAACATTATTGTCCATGACAATATTTTCTCGATAGGCACACATA
TGGTTTCTAATATACTTACTAGTCAAGCAAACCCAGGAATGTGATGGGGA
CTCCTTTTTAGTGCTGAAATTCTCCCACTCTGTGTTCTTTCATCATTGAA
TTGGAGTTTATGTAAAGACAAAAGAAAGGAACAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_g10.g1 MSMg01no276_g10.g1 CHROMAT_FILE:
MSMg01no276_g10.g1 PHD_FILE: MSMg01no276_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:20 2005
         (354 letters)



>mm_chr11_28747147_28747900
          Length = 754

 Score =  625 bits (323), Expect = 0.0
 Identities = 344/351 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatgaattaactgattaatattacagaataatttattgttatgaagaaatattcttagt 60
           |||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct: 551 ggatgaattaactgattaatattacagaataatttattgttatgtagtagtattcttagt 492

                                                                       
Query: 61  agattgataaaaattgatcacctccaagaaaaatgatgatcaagttaattattttccttg 120
           ||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 491 agattgataaaaactgatcacctccaagaaaaatgctgatcaaattaattattttccttg 432

                                                                       
Query: 121 gtctttctccatattgatgctttaaaaattcaatatttttgaatagctaagttgaacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 431 gtctttctccatattgatgctttaaaaattcaatatttttgaatagctaaggtgaacatt 372

                                                                       
Query: 181 attgtccatgacaatattttctcgataggcacacatatggtttctaatatacttactagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 attgtccatgacaatattttctcgataggcacacatatggtttctaatatacttactagt 312

                                                                       
Query: 241 caagcaaacccaggaatgtgatggggactcctttttagtgctgaaattctcccactctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 caagcaaacccaggaatgtgatggggactcctttttagtgctgaaattctcccactctgt 252

                                                              
Query: 301 gttctttcatcattgaattggagtttatgtaaagacaaaagaaaggaacaa 351
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gttctttcatcattgaattggagtttatgtaaagacaaaagaaaggaacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)