CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAGAAATTCTCCCATCAAACATAAAAGAAAAGTGTAAATGAGGG
ATATTTAAATATTAATTAATCAGTACCTGAGAAACATTTGTAATTCCCTA
TCTTGGTTTATTTAGATAAATACCTTTTGATCTGAACCACAGGAAAATTC
TGAGCTGTTTGAGTGTGCATGATGAATGGCCTCCATTCATGCTTGAATTC
AAATGAACAAAGAAAGACAGGCTCTCTACTGACAAATCACTTTCATTTGA
CATTTCAGCTCTAAACACTGAGGAAAGACTTGAAGTTACCAAGTGAATGT
GAAAAATATCATTTTGTTGAGTGCATACCAAAACATTGTTTTATGCAACA
ATAATGGTCTATGATGAAGGTAACTATCCTCTATAAAAACAATGGTTTTC
ATATGTATATATATACTTGCTGTGAGCTGAGCTTGACAGCTGTTTGATTT
AGGGGGAAAAACCCAACCATTAATTTAAAAATTATTCCATATAGTTACAG
CAGGATTTTAAAGTCAAGCATTTGCCCAATTTGAGCTACTACTATTAGTA
CAAAGACCCCACAGCTCTCAATTTCGGCTGCTTTACATACTTCAGGGAAG
CAGCTGTATAATTTGATTTTATTTTAGGATCTGGCTTTGATCCTAAGTAA
TATTTGTGACATAAAAATGATTTCATAGGCTTACCTTG

ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAGGGTCTAATGAAGAAACCTGTCT
CAGTGGGATTTTCTAACGTTTCTTATGGTAAGCCATATCTGGATAAGACT
GTCCTTTCTGTCCTAGTAAATATCTTGCAGACTAGCCCTGAGCTGTTGGC
TCCGTCTTTTGTAATGCTTAATTAGTAACTGAATAGGTAACTTCCTTGTT
GAACTCCAAGTATTCAGCTAAACGGTTTTTCTAGGATGTTGGAACACTGA
CTTACTAAAGGAGAGCACATGGATCCATACACCAGACAAACGCAGGGATA
GGGTAAGAATATTAGTTTATTCCCCCCGCCACCGCTCAGTNNNNNNNNNT
CTGTACTCTTCNNNNNNNNNNAAGATAATTACAANCCCNNNCTATCAAGC
GGCTTTTNNNNNNNNNNGCATGGGATCTCCCCCATTCTCTTATTATTCAN
CTTGAAGTTCTAAGAATGCCCCCCCCCCGTTGTAGTGAANNNNTTGTCAG
TTGNGCGGNNNNNNNNNNNNNNNNNTCTATGAAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGGGGGGGGTAAAAGAACTCCTG

Query= MSMg01no276_k23.b1 MSMg01no276_k23.b1 CHROMAT_FILE:
MSMg01no276_k23.b1 PHD_FILE: MSMg01no276_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:40 2005
         (358 letters)



>mm_chr11_27923069_27923826
          Length = 758

 Score =  557 bits (288), Expect = e-163
 Identities = 356/418 (85%), Gaps = 60/418 (14%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacattgttttatgcaacaataatggtctatgatgaaggtaactatcctctataaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 aaacattgttttatgcaacaataatggtctatgatgaaggtaactatcctctataaaaac 200

                                                                       
Query: 61  aatggttttc-------------------------------------------------- 70
           ||||||||||                                                  
Sbjct: 201 aatggttttcatatatatatatatatatatatatatatatatatatatatatatatatat 260

                                                                       
Query: 71  ----------atatgtatatatatacttgctgtgagctgagcttgacagctgtttgattt 120
                     |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatatatatatatatatatatatacttgctgtgagctgagcttgacagctgtttgattt 320

                                                                       
Query: 121 agggggaaaaacccaaccattaatttaaaaattattccatatagttacagcaggatttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 agggggaaaaacccaaccattaatttaaaaattattccatatagttatagcaggatttta 380

                                                                       
Query: 181 aagtcaagcatttgcccaatttgagctactactattagtacaaagaccccacagctctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtcaagcatttgcccaatttgagctactactattagtacaaagaccccacagctctca 440

                                                                       
Query: 241 atttcggctgctttacatacttcagggaagcagctgtataatttgattttattttaggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttcggctgctttacatacttcagggaagcagctgtataatttgattttattttaggat 500

                                                                     
Query: 301 ctggctttgatcctaagtaatatttgtgacataaaaatgatttcataggcttaccttg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggctttgatcctaagtaatatttgtgacataaaaatgatttcataggcttaccttg 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)